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TranscriptomicsTracking the elusive function of Bacillus subtilis Hfq (NimbleGen)
Transcriptomic analysis of Bacillus subtilis hfq mutant in exponential phase of growth. Wild-type strain and hfq mutant cells in exponentially growth phase were subjected to tiling array gene expression analysis. RNA-binding protein Hfq is a key component of the adaptive responses of many proteobact...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2015-06-22 | E-GEOD-66891 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of a Staphylococcus aureus mutant defective in the transcription termination factor Rho.
This analysis is part of the study Whole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions (Mäder, Nicolas et al., to be submitted) where the S. aureus HG001 transcriptome was analyzed under more than 40 different biological conditions. The data rev...
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70041 | biostudies-arrayexpress
TranscriptomicsTracking the elusive function of Bacillus subtilis Hfq (Agilent)
Transcriptomic analysis of Bacillus subtilis wild-type strain and hfq mutant in stationary phase of growth using to tiling array gene expression analysis. RNA-binding protein Hfq is a key component of the adaptive responses of many proteobacterial species. In these organisms, the importance of Hfq l...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2015-06-22 | E-GEOD-66892 | biostudies-arrayexpress
TranscriptomicsTiling array hybridizations of genomic DNA from Bacillus subtilis 168.
Genomic DNA prepared from B. subtilis 168 cells grown to stationary phase was hybridized to tiling arrays. The data are used in transcriptome studies to compute expression intensities from raw intensity data using a model of shift and drift and correcting for probe affinity variations as described i...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2012-03-07 | E-GEOD-27419 | biostudies-arrayexpress
TranscriptomicsStaphylococcus aureus HG001
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70043 | biostudies-arrayexpress
TranscriptomicsTiling array hybridizations of genomic DNA from Staphylococcus aureus HG001.
This analysis is part of the study Whole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions (Mäder, Nicolas et al., to be submitted) where the S. aureus HG001 transcriptome was analyzed under more than 40 different bilogical conditions. Genomic DNA w...
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70042 | biostudies-arrayexpress
TranscriptomicsTracking the elusive function of Bacillus subtilis Hfq
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2015-06-22 | E-GEOD-66893 | biostudies-arrayexpress
TranscriptomicsConstitutive stringent response restores viability of Bacillus subtilis lacking Structural Maintenance of Chromosome protein
Bacillus subtilis mutants lacking the SMC-ScpAB complex are severely impaired for chromosome condensation and partitioning, DNA repair, and cells are not viable under standard laboratory conditions. We isolated suppressor mutations that restored the capacity of a smc deletion mutant (Δsmc) to grow u...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2015-09-23 | E-GEOD-73315 | biostudies-arrayexpress
TranscriptomicsThe condition-dependent transcriptome of Bacillus subtilis 168
Recent studies revealed the unsuspected complexity of the bacterial transcriptome but its systematic analysis across many diverse conditions remains a challenge. Here we report the condition-dependent transcriptome of the prototype strain B. subtilis 168 across 104 conditions reflecting the bacteriu...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2012-03-07 | E-GEOD-27219 | biostudies-arrayexpress
TranscriptomicsWhole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions
We report the condition-dependent transcriptome of S. aureus HG001, a derivative of strain NCTC 8325, by strand-specific tiling array hybridizations. More than 40 experimental conditions were investigated ranging from optimal in vitro growth to interaction with host cells. Analyses included the syst...
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70040 | biostudies-arrayexpress
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