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ProteomicsPolyethylene terephthalate and its monomers degradation by Ideonella sakaiensis
Synthetic plastics, like polyethylene terephthalate (PET), have become an essential part of modern life. Many of these products are remarkably persistent in the environment, and the accumulation in the environment is recognised as a major threat. Therefore, an increasing interest has been paid to sc...
ORGANISM(S): Ideonella sakaiensis 
2023-04-04 | PXD035497 | Pride
Plastic degrader Proteomics Polyethylene terephthalate Β-oxidation Ethylene glycol Polyhydroxyalkanoate Terephthalic acid 
ProteomicsPolyethylene terephthalate and its monomers degradation by Ideonella sakaiensis (secreted)
Synthetic plastics, like polyethylene terephthalate (PET), have become an essential part of modern life. Many of these products are remarkably persistent in the environment, and the accumulation in the environment is recognised as a major threat. Therefore, an increasing interest has been paid to sc...
ORGANISM(S): Ideonella sakaiensis 
2023-04-04 | PXD037565 | Pride
Ideonella sakaiensis Plastic degrader Proteomics Polyethylene terephthalate Β-oxidation Ethylene glycol Polyhydroxyalkanoate Terephthalic acid 
ProteomicsIdentification of TBBPA-degraders in anaerobic bioreactor at environmentally relevant concentrations by combined protein-based stable isotope probing and metagenomics
The aim of this study was to identify TBBPA-degrading organisms in a complex microbial community by a metagenome-based functional metaproteomic approach, using protein-based stable isotope probing (protein-SIP). Firstly, the degradation kinetics were evaluated in order to simulate the decrease of re...
ORGANISM(S): anaerobic digester metagenome 
2022-09-12 | PXD030335 | Pride
Anaerobic digestion Stable isotope probing Tetrabromobisphenol a Metaproteomics 
ProteomicsThermal acclimation in Drosophila melanogaster
Thermal acclimation study on Drosophila melanogaster reared at 3 different temperatures (12, 25, and 31oC). The proteomic profiles of D. melanogaster under these different temperatures were analyzed and compared using label-free tandem mass spectrometry.
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2016-03-15 | PXD003755 | Pride
Drosophila Label-free Termal acclimation Lc-ms/ms 
ProteomicsMAA-SIP biomethanisation with hydrogen addition
By using metagenome resolved protein stable isotope probing (protein-SIP) through incubations of identical reactors with 13C labelled bicarbonate over a period of 48 hours, the study aims to map differences in the metabolic behaviour of the microbial community during anaerobic digestion.
ORGANISM(S): anaerobic digester metagenome 
2021-12-05 | PXD027519 | Pride
Biomethanisation Anaerobic digestion Protein-sip Metagenomics Wood-ljungdahl pathway Anaplerotic carbon fixation 
ProteomicsImpact of Polyethylene on Salivary Glands Proteome in Galleria melonella
Polyethylene pollutions are considered inert in nature and adversely affect the entire ecosystem. Larvae of greater wax moths (Galleria mellonella) have the ability to masticate and potentially biodegrade polyethylene films at elevated rates. The wax moth has been thought to metabolize PE independen...
ORGANISM(S): Galleria mellonella 
2020-03-19 | PXD016834 | Pride
Greater wax moth Polyethylene Biodegradation Salivary glands 
ProteomicsIdentification of syntrophic acetate-oxidizing bacteria in anaerobic digesters
Inhibition of the anaerobic digestion process through accumulation of volatile fatty acids (VFA) is a recurring problem which is the result of unbalanced growth between acidogenic bacteria and methanogens. A speedy recovery is essential for an establishment of a feasible economical biogas production...
ORGANISM(S): Methanoculleus sp. 10 
2016-05-11 | PXD002996 | Pride
Lc-ms/ms Biogas Anaerobic digesters Protein-stable isotope probing 
ProteomicsNew mode of methanogenesis observed in the coal degrading methanogen Methermicoccus shengliensis
Methane-generating Archaea drive the final step in anaerobic organic compound mineralization and dictate the carbon flow of Earth’s diverse anaerobic ecosystems. Although such Archaea were presumed to be restricted to life on simple compounds like H2, acetate or methanol, an archaeon, Methermicoccus...
ORGANISM(S): Methermicoccus shengliensis DSM 18856 
2021-06-20 | PXD018934 | Pride
Demethoxylation Methyl transfer Methanogen Methoxylated aromatic compounds 
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