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MetabolomicsCoupled nitrogen fixation and substrate stabilization drive ecological strategy shifts during microbial succession

Background:

Primary succession is predicted to proceed through shifts from stress-tolerant to competitive to cooperative ecological strategies as resource availability increases, yet molecular evidence for these transitions in microbial systems remains limited. Here, we used an integrated m...

2026-03-12 | MTBLS14041 | MetaboLights
MetabolomicsInorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp. Strain PCC 6803
The amount of inorganic carbon represents one of the main environmental factors determining productivity of photoautotrophic organisms. Using the model cyanobacterium Synechocystis sp. PCC 6803, we performed a first metabolome study with cyanobacterial cells shifted from high CO2 (5% in air) into co...
2015-09-14 | MTBLS5 | MetaboLights
ProteomicsColumbia River sediment HUM-V (Hyporheic Uncultured Microbial and Viral) database metaproteome
Metaproteomic data for Rodriguez-Ramos, et al. interrogating microbial and viral communities of hyporheic river sediments within the Columbia River. Samples were digested with trypsin, and analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
2021-04-28 | MSV000087330 | MassIVE
GenomicsBioScales - Defining plant gene function and its connection to ecosystem nitrogen and carbon cycling
BioScales - Defining plant gene function and its connection to ecosystem nitrogen and carbon cycling Metagenome
PRJNA1034652 | ENA
ProteomicsFungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acidic environments
Proteins from acid mine drainage microbial communities were extracted, trypsine digested and identified with LC-MS/MS analysis.
ORGANISM(S): uncultured microorganism 
2016-03-15 | PXD003541 | Pride
Fungi Nitrogen and carbon cycling Microbial community Lc-ms/ms 
GenomicsInteractions between microplastics and salinization reshape soil carbon-nitrogen cycling and greenhouse gas emissions: insights from multi-omics
Interactions between microplastics and salinization reshape soil carbon-nitrogen cycling and greenhouse gas emissions: insights from multi-omics Raw sequence reads
PRJNA1399111 | ENA
ProteomicsDinoflagellates contribute to primary and secondary production across biogeochemical gradients of the central Pacific Ocean
In this study we explored the metabolism of unicellular eukaryotic organisms (protists) across a 4,600 km meridional transect in the central Pacific Ocean. The region contains a natural biogeochemical gradient spanning from low nitrogen, oligotrophic waters to a productive equatorial upwelling syste...
ORGANISM(S): Phytoplankton Environmental Sample (ncbitaxon:1249885) 
2021-11-03 | MSV000088314 | MassIVE
UnknownProtozoa-driven micro-food webs shaping carbon and nitrogen cycling in reservoir ecosystems.
Not available
S-EPMC12372383 | biostudies-literature
UnknownCoupled carbon and nitrogen cycling regulates the cnidarian-algal symbiosis.
Not available
S-EPMC10620199 | biostudies-literature
ProteomicsVibrio campbellii C/N-limitation
Analyses of Vibrio campbellii CAIM519 under C- and N-limited growth conditions, in both light and dark. Peak Lists are diDO-IPTL analyses; Raw files are unlabeled peptide with 2 synthetic proteorhodopsin standard peptides. See Gallagher & Waldbauer (mSystems) for details.
ORGANISM(S): Vibrio Campbellii Caim 519 = Nbrc 15631 (ncbitaxon:1224742) 
2021-03-25 | MSV000087100 | MassIVE
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