Nls - OmicsDI

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Unknown (1132)
Genomics (317)
Transcriptomics (309)
Proteomics (211)
Metabolomics (25)
Other (13)
Methylation profiling (3)
Multiomics (1)

Organisms

Homo sapiens (259)
Mus musculus (105)
Caenorhabditis elegans (30)
Drosophila melanogaster (23)
Arabidopsis thaliana (19)
Schizosaccharomyces pombe (9)
Danio rerio (9)
Saccharomyces cerevisiae (8)
Rattus norvegicus (6)
Zea mays (3)
Bos taurus (3)
Macaca fascicularis (2)
Neisseria meningitidis (2)
Bacillus subtilis (2)
Salmo salar (2)
Canis lupus familiaris (2)
Sus scrofa (2)
Bombyx mori (2)
Mycobacterium phage Giles (1)
Peromyscus leucopus (1)
Nannochloropsis oceanica (1)
Caenorhabditis briggsae (1)
Pristionchus pacificus (1)
Populus tremuloides (1)
Mytilus galloprovincialis (1)
Leishmania donovani (1)
Anguilla anguilla (1)
Salmonella enterica (1)
Brassica juncea (1)
Dictyostelium discoideum (1)

Organisms

Homo sapiens (84)
Mus musculus (45)
Arabidopsis thaliana (14)
Drosophila melanogaster (13)
Danio rerio (13)
Saccharomyces cerevisiae (6)
Caenorhabditis elegans (5)
Trypanosoma brucei brucei (2)
Oryza sativa (2)
Brachypodium distachyon (1)
Xenopus laevis (1)
Mesocricetus auratus (1)
Aspergillus fumigatus (1)
Saccharomyces cerevisiae BY4741 (1)
Solanum lycopersicum (1)
Ciona intestinalis (1)
Rattus norvegicus (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (380)
ENA (230)
geo (94)
pride (78)
MassIVE (33)
MetaboLights (25)
jPOST (21)
EGA (9)
iProX (6)
GPMDB (2)
PAXDB (2)

Tissue

Cell culture (25)
Epithelial cell (10)
Permanent cell line cell (8)
Kidney (5)
B cell (3)
Root (3)
Shoot (3)
Stem cell (3)
Cell suspension culture (2)
Fibroblast (2)
HEK-293T cell (2)
Heart (2)
Whole body (2)
Abdominal adipose tissue (1)
Acute myeloid leukemia cell (1)
Adipose-derived stem cell (1)
Adipose-derived stromal cell (1)
Articular cartilage (1)
Articular chondrocyte (1)
Blood cell (1)
Bone marrow hematopoietic cell (1)
Bone marrow stem cell (1)
Brain (1)
Cervical cancer cell line (1)
Early embryonic cell (1)
Embryo (1)
Embryonic kidney cell line (1)
Embryonic stem cell (1)
Epithelial cell of proximal tubule (1)
Excretion (1)

Disease

Normal (5)
Breast cancer (3)
Disease free (3)
Not Available (2)
Monoclonal gammopathy of unknown significance (MGUS) (1)
Asthma (1)
Glioma (1)
Hepatocellular carcinoma (1)
IgG negative for EV71 and CA21 (1)
Normoglycaemic (1)
Acute promyelocytic leukemia (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
Colon cancer (1)
Endocervical adenocarcinoma (1)
Facioscapulohumeral muscular dystrophy (1)
Filariasis (1)
Human immunodeficiency virus infectious disease (1)
Influenza (1)
Knee osteoarthritis (1)
Melanoma (1)
Multiple myeloma (1)
Osteosarcoma (1)
Papillary renal cell carcinoma (1)
Rheumatoid arthritis (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (78)
Affinity purification coupled with mass spectrometry proteomics (41)
Shotgun proteomics (26)
Mass spectrometry (12)
Bottom-up proteomics (10)
Mass spectrometry assay (9)
Data-dependent acquisition (8)
Gel-based experiment (8)
NMR spectroscopy (5)
Data-independent acquisition (4)
Illumina HiSeq 2000 (2)
Top-down proteomics (2)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Illumina HiSeq 2000 (9)
NextSeq 500 (9)
Illumina NovaSeq 6000 (7)
Illumina HiSeq 2500 (4)
Illumina MiSeq (3)
TripleTOF 5600 (3)
AB SOLiD 4 System (2)
NextSeq 2000 (2)
Instrument (2)
LTQ Orbitrap Elite (2)
DNBSEQ Devices (1)
TriFast (VWR, 30-2010), RNeasy Mini Kit (Qiagen, 74104), DNAse 1 (NEB, M0303); Agilent 2100 Bioanalyzer (1)
HEK-293T cells, Media, PEI, Illumination device (1)
Mac (1)
Cell culture reagents and serum (1)
KAPA mRNA HyperPrep kit (1)
Qiagen RNeasy kit (1)
Cell culture reagents and Qiagen RNEasy kit (1)
GenePix4000B (1)
InnoScan 900 (1)
Perkin Elmer, USA (1)
Genetix aQuire (1)
Agilent Technologies Scanner G2505C (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
GenePix 4000B (1)
DNBSEQ-G400 (1)
Illumina HiSeq 4000 (1)

Publication Date

2014 (67)
2013 (65)
2011 (51)
2015 (44)
2012 (41)
2022 (38)
2026 (33)
2023 (33)
2010 (33)
2021 (32)
2024 (30)
2019 (26)
2016 (26)
2025 (24)
2020 (19)
2018 (17)
2017 (17)
2007 (12)
2009 (11)
2008 (10)
2005 (3)
2004 (2)
2006 (1)

UNIPROT ID/AC

3MGA_BACSU (1)
3MGH_BACSU (1)
4OT_BACSU (1)
53DR_BACSU (1)
6PGDH_BACSU (1)
6PGD_BACSU (1)
6PGL_BACSU (1)
A0A1S3CTQ6_DIACI (1)
A0A1S3CU82_DIACI (1)
A0A1S3CUK5_DIACI (1)
A0A1S3CUN3_DIACI (1)
A0A1S3CUN9_DIACI (1)
A0A1S3CVR8_DIACI (1)
A0A1S3CVS6_DIACI (1)
A0A1S3CVX0_DIACI (1)
A0A1S3CW50_DIACI (1)
A0A1S3CWG9_DIACI (1)
A0A1S3CWH8_DIACI (1)
A0A1S3CWL5_DIACI (1)
A0A1S3CWM4_DIACI (1)
A0A1S3CWQ4_DIACI (1)
A0A1S3CWY8_DIACI (1)
A0A1S3CX64_DIACI (1)
A0A1S3CXA8_DIACI (1)
A0A1S3CXH2_DIACI (1)
A0A1S3CYI0_DIACI (1)
A0A1S3CYI8_DIACI (1)
A0A1S3CZ97_DIACI (1)
A0A1S3CZC3_DIACI (1)
A0A1S3CZG3_DIACI (1)

CHEBI ID

CHEBI:15354 (7)
CHEBI:16919 (6)
CHEBI:64561 (4)
CHEBI:26271 (4)
CHEBI:18132 (4)
CHEBI:18186 (4)
CHEBI:16811 (4)
CHEBI:27266 (4)
CHEBI:17750 (4)
CHEBI:16467 (4)
CHEBI:17203 (4)
CHEBI:16449 (4)
CHEBI:18050 (4)
CHEBI:29016 (4)
CHEBI:15366 (4)
CHEBI:16737 (4)
CHEBI:27897 (4)
CHEBI:17895 (4)
CHEBI:17295 (4)
CHEBI:17368 (4)
CHEBI:30769 (4)
CHEBI:20067 (4)
CHEBI:86031 (3)
CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:27570 (3)
CHEBI:30751 (3)
CHEBI:16997 (3)
CHEBI:26986 (3)
CHEBI:17234 (3)

Metabolite Name

L-Tyrosine (9)
Choline (7)
Creatine (7)
L-Proline (6)
L-Histidine (6)
Creatinine (6)
L-Phenylalanine (6)
Inosine (6)
Hypoxanthine (6)
Corticosterone (5)
Betaine (5)
L-Arginine (5)
L-Threonine (5)
Cytidine (5)
L-Cystine (4)
Propionylcarnitine (4)
L-Lysine (4)
Spermidine (4)
Cytosine (4)
L-Glutamine (4)
Uridine (4)
L-Carnitine (4)
L-Methionine (4)
Ribostamycin (3)
Isoleucyl-Alanine (3)
Olanzapine (3)
Gamma-Glutamylcysteine (3)
Dihydrofolic acid (3)
Pyruvic acid (3)
Oxoglutaric acid (3)

First Public Date

2024 (28)
2025 (26)
2021 (26)
2023 (25)
2014 (24)
2026 (22)
2022 (22)
2019 (16)
2020 (14)
2018 (10)
2017 (8)
2016 (4)
2015 (3)
2013 (2)

Classification

protozoa (2)
fungi (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (142)
Proteomic profiling by array (67)
ChIP-seq (59)
RNA-seq of coding RNA (53)
Other (8)
RNA-seq of non coding RNA (8)
Unknown experiment type (5)
ChIP-chip by array (5)
Antigen profiling (5)
Genotyping by array (4)
RNA-seq of coding RNA from single cells (4)
Human - One-color microarray (3)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by tiling array (1)
One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
RIP-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2023 (107)
2022 (106)
2014 (104)
2020 (98)
2015 (91)
2013 (90)
2021 (86)
2012 (81)
2025 (81)
2011 (81)
2018 (78)
2017 (76)
2019 (74)
2024 (73)
2016 (71)
2010 (52)
2009 (32)
2008 (31)
2007 (21)
2026 (15)
2005 (12)
2006 (11)
2004 (11)
2003 (10)
2000 (7)
1999 (4)
2002 (3)
2001 (3)
1998 (2)
1997 (1)

Lab affiliation

Carnegie Institution at Stanford (2)
Department of Biology, University of Fribourg, 1700 Fribourg, Switzerland (2)
Dept. of Molecular Biosciences, University of Texas at Austin, Texas 78712 USA (2)
University of California, Riverside (2)
1.Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA 2.Carnegie Mass Spectrometry Facility, Carnegie Institution for Science, Stanford, California, USA (1)
Assistant professor, Biochemistry and Molecular Biology, Johns Hopkin Bloomberg Schools of Public Health, USA. (1)
Assitant Professor, Jaypee University of Information and Technology (1)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Biomedical Center, LMU Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried Phone: (089) 2180 75420 (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS (1)
Carnegie Mass Spectometry facility Carnegie Science at Stanford (1)
Cell Biology & Physiology, Washington University School of Medicine in St. Louis (1)
Cell and Chemical Biology Leiden University Medical Center Leiden the Netherlands (1)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (1)
Cellular Dynamics Laboratory, RIKEN Cluster for Pioneering Research (CPR),Saitama 3510198, Japan. Present address:Jikei University of Health Care Sciences, Graduate School of Medical Safety Management, Osaka, Japan. (1)
Chair of Immunobiology, Yale University (1)
Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison WI 53706, USA (1)
Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia Canada B3H4R2, Department of Pediatrics, Atlantic Research Centre, Dalhousie University, Halifax, Nova Scotia Canada B3H4R2 (1)
Department of Biochemistry and Biomedical Sciences McMaster University (1)
Department of Biology, Stanford University, Stanford, USA (1)
Department of Biomedical Science E-04, Florey building Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (1)
Department of Biotechnology, Agricultural University of Athens, Iera Odos 75, Athens 118 55, Greece (1)
Department of Cell Biology and Physiology, Washington University in St. Louis (1)
Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON, Canada (1)
Department of Genetics, Cell Biology & Development, University of Minnesota (1)
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands (1)
Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke (1)
Department of Infection Biology Institute of Infection & Global Health University of Liverpool Liverpool Science Park IC2 146 Brownlow Hill Liverpool L3 5RF UK (1)
Department of Internal Medicine Division of Pulmonary, Critical Care, and Sleep Medicine Davis Heart and Lung Research Institute, 473 W. 12th Avenue, Columbus, OH. 43210 (1)

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RAD21-TEV NLS-TEV rescue RNAseq

PRJNA631236 | ENA

Nuclear GFP ChIP-seq from human Monocyte Derived Dendritic Cells transduced with GFP-NLS-cGAS or GFP-NLS

PRJNA516357 | ENA

Profiling of APEX-NLS and APEX-PMLca associated regions

PRJNA600224 | ENA

RAD21-TEV NLS-TEV RNAseq - extended cohesin depletion

PRJNA679484 | ENA

Activating transcription factor 6 is necessary and sufficient for alcoholic fatty liver disease in zebrafish

ATF6 is a key regulator of the unfolded protein response. Through use of zebrafish and cultured cells we demonstrate that ATF6 drives fatty liver disease by interaction with fatty acid synthase (FASN). Total small RNA from livers of 5 dpf larval zebrafish were collected: 2 batches of Tg(fabp10:nls-m...

ORGANISM(S): Danio rerio

2014-05-01 | E-GEOD-56498 | biostudies-arrayexpress

RAD21-TEV NLS-TEV rescue RNAseq

RNA-seq of and doxycycline treated Rad21-TEV primary neuron transduced with NLS-TEV

ORGANISM(S): Mus musculus

2021-02-28 | GSE150128 | GEO

Knock-out of the nuclear localization in pp65 protein of Cytomegalovirus: biologic and immunologic effects

The CMVpp65 protein contains 2 bipartite nuclear localization signals (NLS) at 415-438aa and 537-561aa near the carboxy terminus of CMVpp65 and a phosphate binding site related to kinase activity at lysine-436. A mutation of pp65 having K436N (CMVpp65mII) and further deletion of aa537-561 resulted ...

ORGANISM(S): Homo sapiens

2009-01-30 | E-GEOD-14347 | biostudies-arrayexpress

ChIP-Seq of H3K27ac in Actb-/- MEFs expressing NLS-tagged beta-actin

PRJNA880775 | ENA

Regulation of gene expression during formation of nodule-like structures (NLS) in rice roots

Several studies have shown that plant hormones play key roles during legume-rhizobia symbiosis. For instance, auxins can induce formation of nodule-like structures (NLS) on legume roots in the absence of rhizobia. Furthermore, these NLS can be colonized by nitrogen-fixing bacteria, which favor nitro...

ORGANISM(S): Oryza sativa

2019-01-01 | GSE92835 | GEO

RNA-Sequencing of 2,4-D treated Brachypodium distachyon roots containing NLS

In this study we treated Brachypodium distachyon roots with synthetic auxin, 2,4-D, to induce nodule-like structures (NLS) and performed RNA-seq to assess transcriptome changes during NLS formation.

ORGANISM(S): Brachypodium distachyon

2018-04-22 | GSE97940 | GEO

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