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ProteomicsCombining high resolution and exact calibration to boost statistical power: A well-calibrated score function for high-resolution MS2
This project reanalzyes data from 4 other projects. Information about the samples can be found in the following four publications. The four samples used in this study include a ocean metaproteome sample, a human sample, a E. coli sample, and a Plamodium falciparum sample. B. N. Pease, E. L. Huttli...
ORGANISM(S): Homo sapiens (Human) Plasmodium falciparum (isolate 3D7) Escherichia coli 
2018-09-19 | PXD009265 | Pride
E. coli Score function Ocean Human Plasmodium 
UnknownFaster and more accurate graphical model identification of tandem mass spectra using trellises.
Not available
S-EPMC4908353 | biostudies-literature
UnknownPREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition.
Not available
S-EPMC5895786 | biostudies-literature
UnknownPredicting cell cycle stage from 3D single-cell nuclear-stained images.
Not available
S-EPMC11969383 | biostudies-literature
UnknownSceptic: pseudotime analysis for time-series single-cell sequencing and imaging data.
Not available
S-EPMC12273354 | biostudies-literature
UnknownComprehensive statistical inference of the clonal structure of cancer from multiple biopsies.
Not available
S-EPMC5717219 | biostudies-literature
UnknownSingle-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.
Not available
S-EPMC8474932 | biostudies-literature
ProteomicsProteomic analysis of Tks5 interactome to identify common marker of all types of invadosomes.
Invasion of the extracellular matrix is needed for physiological events such as wound healing but is also required at different stages of the metastatic process. The ability to progress and invade through the extracellular matrix is a characteristic shared by both normal and cancer cells through the...
ORGANISM(S): Mus musculus (Mouse) 
2025-11-26 | PXD046512 | Pride
Invadosomes Nih cells Tks5 Quantitative proteome Translation 
ProteomicsProteomic analysis of Tks5 interactome to identify common marker of all types of invadosomes.
Invasion of the extracellular matrix is needed for physiological events such as wound healing but is also required at different stages of the metastatic process. The ability to progress and invade through the extracellular matrix is a characteristic shared by both normal and cancer cells through the...
ORGANISM(S): Homo sapiens (Human) 
2025-11-26 | PXD046515 | Pride
Invadosomes Tks5 Quantitative proteome Translation A431 cells 
ProteomicsMag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome
Membrane-bound particles in plasma are composed of exosomes, microvesicles, and apoptotic bodies and represent ~1-2% of the total protein composition. Proteomic interrogation of this subset of plasma proteins augments the representation of tissue-specific proteins, representing a “liquid biopsy,” wh...
ORGANISM(S): Homo Sapiens 
PXD042947 | panorama
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