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ProteomicsCombining high resolution and exact calibration to boost statistical power: A well-calibrated score function for high-resolution MS2
This project reanalzyes data from 4 other projects. Information about the samples can be found in the following four publications. The four samples used in this study include a ocean metaproteome sample, a human sample, a E. coli sample, and a Plamodium falciparum sample. B. N. Pease, E. L. Huttli...
ORGANISM(S): Homo sapiens (Human) Plasmodium falciparum (isolate 3D7) Escherichia coli 
2018-09-19 | PXD009265 | Pride
E. coli Score function Ocean Human Plasmodium 
ProteomicsDIAmeter: Matching peptides to data-independent acquisition mass spectrometry data
This dataset consists of three mass spectrometry experiments where different isolation window sizes were explored in combination with gas phase fractionation, using a yeast lysate with selective oxidation of methionine. The resulting DIA data, as .raw files, include (1) one run covering the 400--120...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-05-31 | PXD025385 | Pride
Yeast 
ProteomicsAccurately Assigning Peptides to Spectra When Only a Subset of Peptides Are Relevant
The standard proteomics database search strategy involves searching spectra against a peptide database and estimating the false discovery rate (FDR) of the resulting set of peptide-spectrum matches. One assumption of this protocol is that all the peptides in the database are reDR control strategies ...
ORGANISM(S): Ricinus communis Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2021-06-17 | PXD022778 | Pride
Ups1 Ricin Yeast Castor Human 
ProteomicsSingle-point Calibration
Mass spectrometry (MS) measurements are not inherently calibrated. Researchers use various calibration methods to assign meaning to arbitrary signal intensities and improve precision. Internal calibration (IC) methods use internal standards (IS) such as synthesized or recombinant proteins or peptide...
ORGANISM(S): Saccharomyces Cerevisiae 
2019-02-02 | PXD011297 | panorama
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