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MetabolomicsMetabolome of the Medicago truncatula symbiosome space, bacteroid, and nodule cytosol
This study characterizes the metabolome of the Medicago truncatula-Sinorhizobium meliloti symbiosis. Symbiosome space, bacteroid, and nodule cytosol fractions were isolated from 4-week-old root nodules and profiled by untargeted liquid chromatography-tandem mass spectrometry (LC-MS/MS). Polar metabo...
2026-08-19 | MTBLS15392 | MetaboLights
TranscriptomicsOrganogenic nodule formation from internodes of Humulus lupulus
Transcriptional profiling of hop samples throughout in vitro culture on medium with sucrose and hormones IAA and BAP Study of gene expression involved in stress response during in vitro culture and in organogenic nodule formation Hop (Humulus lupulus L.) is an economically important plant forming ...
ORGANISM(S): Humulus lupulus 
2008-09-01 | E-GEOD-12339 | biostudies-arrayexpress
ProteomicsComparative proteomics analysis of root and nodule mitochondria of soybean
Legumes perform symbiotic nitrogen fixation through rhizobial bacteroids housed in specialised root nodules. The biochemical process is energy‐intensive and consumes a huge carbon source to generate sufficient reducing power. To maintain the symbiosis, malate is supplied by legume nodules to bactero...
ORGANISM(S): Glycine max 
2024-07-16 | PXD050301 | Pride
Nitrogen fixation Data-independent acquisition (dia) proteomics Electron transport chain Glycine max Mitochondria Malate Nodule Legume Soybean 
ProteomicsPersulfidation of plant and bacteroid proteins is involved in legume nodule development and senescence
Legumes establish symbiosis with soil rhizobia forming root nodules that fix atmospheric nitrogen. The central role of reactive oxygen species (ROS) and reactive nitrogen species (RNS) in nodule biology has been clearly established. Recently, hydrogen sulfide (H2S) and other reactive sulfur species ...
ORGANISM(S): Phaseolus vulgaris (Kidney bean) (French bean) 
2024-06-16 | PXD039852 | Pride
Legumes Nodule development Post-translational modifications Symbiosis Persulfidation Nodule senescence Redox regulation 
Genomicsroot nodule metagenome
root nodule metagenome Genome sequencing
PRJNA1200940 | ENA
Genomicsroot nodule metagenome
root nodule metagenome Raw sequence reads
PRJNA820352 | ENA
MetabolomicsUntargeted metabolomic analysis of Stylosanthes guianensis roots and nodules following Bradyrhizobium inoculation in acidic soil
Prior to transplantation into acidic soil, 30-day-old Stylosanthes guianensis seedlings were inoculated with Bradyrhizobium (Br) strain LZ3-2. Sixty days after transplantation, root and nodule samples were collected, flash-frozen in liquid nitrogen, and stored at negative 80 degrees Celsius for subs...
2026-05-22 | MTBLS14552 | MetaboLights
TranscriptomicsOnchocerca-derived small RNAs in host nodules and serum
We report the presence of Onchocerca ochengi and O. volvulus derived small RNAs in bovine nodule fluids and human serum and plasma, respectively. Further comparisons with other related filarial nematodes like Litomosoides sigmodontis and Dirofilaria immitis reveal common and distictive signatures as...
ORGANISM(S): Bos taurus 
2015-04-24 | E-GEOD-63933 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human endothelial cells and pericytes from endometriotic nodules and control endometrial and myometrial tissue to identify specific markers of rectovaginal endometriotic nodule vasculature
To identify specific markers of rectovaginal endometriotic nodule vasculature, highly enriched preparations of vascular endothelial cells and pericytes were obtained from endometriotic nodules and control endometrial and myometrial tissue by laser capture microdissection (LCM), and gene expression p...
ORGANISM(S): Homo sapiens 
2007-09-30 | E-MEXP-1251 | biostudies-arrayexpress
Genomicsroot nodule metagenome
Aldus viridis ssp. fruticosa Nodule Microbiome Metagenomic assembly
PRJNA830531 | ENA
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