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MetabolomicsLinking soil biology and chemistry in biological soil crust using isolate exometabolomics
Metagenomic sequencing provides a window into microbial community structure and metabolic potential; however, linking these data to exogenous metabolites that microorganisms process and produce (the exometabolome) remains challenging. Previously, we observed strong exometabolite niche partitioning a...
2018-07-31 | MTBLS492 | MetaboLights
ProteomicsRoot exudate metabolomics data for Brachypodium distachyon in fabricated ecosystems (EcoFAB 2.0)
Root exudate LC-MS data for Brachypodium distachyon Bd21-3 grown for 5 weeks on different iN+ media (groups: +NH4, +NO3, +NH4NO3) or 3 weeks in iN+ medium followed by two weeks on iN-free medium (groups: -NH4, -NO3, -NH4NO3). Each treatment had 5 biological replicates. The iN+ media contained inorga...
ORGANISM(S): Brachypodium Distachyon (ncbitaxon:15368) 
2023-05-30 | MSV000092053 | MassIVE
ProteomicsMetabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways
Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and...
ORGANISM(S): Gelatoporia Subvermispora (ncbitaxon:42742) Trametes Versicolor (ncbitaxon:5325) 
2024-08-05 | MSV000095519 | MassIVE
ProteomicsLessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning
The Design–Build–Test–Learn (DBTL) cycle, facilitated by exponentially improving capabilities in synthetic biology, is an increasingly adopted metabolic engineering framework that represents a more systematic and efficient approach to strain development than historical efforts in biofuels and bio-ba...
ORGANISM(S): Escherichia Coli 
2019-05-16 | PXD012312 | panorama
MetabolomicsGNPS - GNPS Paper Novel Stenothricin Analog Supporting Information.
Mass spectrometry data, NMR, and sequencing data in support of the discovery of stenothricin-GNPS. Secondary metabolite production of Streptomyces Roseosporus was compared against Streptomyces DSM5940.
ORGANISM(S): Streptomyces (ncbitaxon:1883) 
2015-07-30 | MSV000079204 | GNPS
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