Norway rat - OmicsDI

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Transcriptomics (3400)
Unknown (461)
Proteomics (222)
Genomics (212)
Metabolomics (113)
Other (13)

Organisms

Rattus norvegicus (2457)
Mus musculus (498)
Homo sapiens (399)
Rattus rattus (57)
Drosophila melanogaster (21)
Saccharomyces cerevisiae (14)
Strongyloides ratti (9)
Heterocephalus glaber (8)
Sus scrofa (8)
Arabidopsis thaliana (8)
Trypanosoma brucei (7)
Bos taurus (6)
Caenorhabditis elegans (5)
Gallus gallus (5)
synthetic construct (4)
mixed sample (4)
Fagus sylvatica (4)
Danio rerio (4)
Macaca mulatta (3)
Mus musculus domesticus (3)
Schizosaccharomyces pombe (3)
Trichinella spiralis (2)
Bacteroides fragilis 638R (2)
Callithrix jacchus (2)
Staphylococcus aureus (2)
Salmo salar (2)
Ovis aries (2)
Plasmodium falciparum (2)
Cryptomys hottentotus hottentotus (1)
Spalax carmeli (1)

Organisms

Rattus norvegicus (68)
rat metagenome (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (3482)
MetaboLights (113)
MassIVE (98)
ENA (87)
geo (36)
PAXDB (35)
jPOST (31)
pride (29)
iProX (27)
EGA (10)
EVA (9)
GPMDB (8)
PanoramaPublic (4)

Tissue

Heart (4)
Kidney (3)
Liver (3)
Retina (3)
Brain (2)
Cell culture (2)
Epithelial cell (2)
Skeletal muscle fiber (2)
Urinary bladder (2)
Urine (2)
Visual cortex (2)
Blood vessel (1)
Bone marrow (1)
Clitoral gland (1)
Early embryonic cell (1)
Endothelial cell of hepatic sinusoid (1)
Endothelial cell of sinusoid (1)
Kupffer cell (1)
Leg muscle (1)
Lymph (1)
Primary cell (1)
Regular cardiac myocyte (1)
Seed (1)
Stem cell (1)

Disease

Normal (27)
Burn injury (2)
Hypertension (2)
Glioma (2)
Hypertensive (2)
Fatty liver disease (1)
Pheocromocytoma cell line (1)
Arrhythmias and right ventricular dysfunction (1)
Mild spinal cord injury (1)
Pheochromocytoma (1)
Uninjured (1)
Cocaine addiction (1)
Early-life seizures (1)
Hypotension (1)
Perineural invasion (1)
Mucopolysaccharidosis type 6 (1)
Model of metabolic syndrome (1)
Alzheimer's disease (1)
Autoimmune disorder (1)
EAE-resistant (1)
Ischaemia reperfusion injury (1)
Folate deficiency (1)
Pneumococcal meningitis (1)
Hign immune pressure (1)
No injury (1)
Subarachnoid hemorrhage NOS (1)
Portal hypertension (1)
Insulin resistance (1)
Limited cutaneous subset (1)
Photoreceptor degeneration (1)

Technology Type

Mass spectrometry (65)
Mass spectrometry assay (38)
Mass Spectrometry (29)
Shotgun proteomics (21)
NMR spectroscopy (10)
Bottom-up proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (90)
Illumina HiSeq 2500 (83)
Illumina HiSeq 2000 (52)
NextSeq 500 (42)
Illumina HiSeq 4000 (37)
Illumina HiSeq 1500 (16)
NextSeq 550 (13)
Illumina NovaSeq X (8)
Axon- GenePix4000B (6)
NextSeq 2000 (6)
Illumina MiSeq (5)
Agilent High resolution C scanner (4)
Illumina Genome Analyzer II (4)
Vortex (4)
PALM Robo LCM (3)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Affymetrix GeneChip Scanner 3000 7G (3)
ScanArray 5000 [PerkinElmer] (3)
Scanning hardware (3)
N/A (3)
DNBSEQ-G400 (3)
PromethION (2)
Illumina TruSeq Small RNA Sample kit (2)
TRIzol reagent (2)
Feature Extraction Version: 7.0,10.5 (2)
AB SOLiD 4 System (2)
G2500A GeneArray scanner [Agilent Technologies] (2)
The Agilent scanner G2565BA (2)
Agilent�s Microarray Hybridization Oven (2)
NanoDrop ND-1000 Spectrophotometer (NanoDrop Technologies) (2)

Publication Date

2014 (400)
2015 (374)
2010 (346)
2008 (336)
2013 (325)
2012 (293)
2011 (240)
2016 (237)
2009 (212)
2007 (197)
2022 (90)
2021 (87)
2005 (82)
2026 (79)
2023 (74)
2025 (73)
2020 (73)
2024 (68)
2018 (67)
2017 (57)
2006 (50)
2019 (47)
2004 (22)
2003 (4)

UNIPROT ID/AC

9544.ENSMMUP00000018617 (21)
9544.ENSMMUP00000024369 (21)
9544.ENSMMUP00000025280 (21)
9544.ENSMMUP00000025846 (21)
9544.ENSMMUP00000026578 (21)
9544.ENSMMUP00000027441 (21)
9544.ENSMMUP00000028078 (21)
9544.ENSMMUP00000028594 (21)
9544.ENSMMUP00000029651 (21)
9544.ENSMMUP00000032726 (21)
9544.ENSMMUP00000038917 (21)
9544.ENSMMUP00000039080 (21)
9544.ENSMMUP00000041152 (21)
A0A1D5Q0G5_MACMU (21)
A0A1D5Q3Q0_MACMU (21)
A0A1D5Q4H6_MACMU (21)
A0A1D5Q8I4_MACMU (21)
A0A1D5QD91_MACMU (21)
A0A1D5QFC1_MACMU (21)
A0A1D5QQX5_MACMU (21)
A0A1D5QUV8_MACMU (21)
A0A1D5QWS0_MACMU (21)
A0A1D5R1E0_MACMU (21)
A0A1D5R7W8_MACMU (21)
A0A1K0FU77_MACMU (21)
A0A5F7ZZ82_MACMU (21)
A0A5F8A104_MACMU (21)
A0A5F8A8A6_MACMU (21)
A0A5F8ABN7_MACMU (21)
A0A5F8AD18_MACMU (21)

CHEBI ID

CHEBI:16919 (22)
CHEBI:16704 (21)
CHEBI:15891 (20)
CHEBI:17596 (20)
CHEBI:30769 (20)
CHEBI:17568 (19)
CHEBI:15428 (19)
CHEBI:17154 (19)
CHEBI:16737 (19)
CHEBI:17368 (18)
CHEBI:6650 (17)
CHEBI:18012 (17)
CHEBI:15741 (16)
CHEBI:7916 (16)
CHEBI:17203 (16)
CHEBI:16015 (16)
CHEBI:15676 (15)
CHEBI:16040 (15)
CHEBI:17268 (15)
CHEBI:15354 (15)
CHEBI:17895 (15)
CHEBI:15756 (15)
CHEBI:16708 (14)
CHEBI:18211 (14)
CHEBI:17821 (14)
CHEBI:16750 (14)
CHEBI:30915 (14)
CHEBI:17295 (14)
CHEBI:20067 (14)
CHEBI:16359 (13)

Metabolite Name

Uracil (29)
Inosine (26)
Hypoxanthine (26)
Taurine (25)
Uridine (25)
Creatinine (25)
Pantothenic acid (24)
Xanthosine (22)
Cholic acid (22)
Creatine (22)
Taurocholic acid (21)
Cytosine (21)
Uric acid (21)
L-Proline (20)
Kynurenic acid (19)
Choline (19)
Azelaic acid (19)
Xanthine (19)
Hippuric acid (19)
Citrulline (18)
L-Histidine (18)
Indole (18)
Deoxycholic acid (18)
Oleamide (18)
Adenosine (18)
L-Isoleucine (18)
L-Phenylalanine (18)
Serotonin (17)
Urocanic acid (17)
Adenine (17)

First Public Date

2014 (36)
2020 (9)
2024 (7)
2022 (6)
2021 (6)
2013 (6)
2023 (5)
2015 (4)
2025 (2)
2018 (2)
2019 (1)
2017 (1)
2016 (1)
2010 (1)

Modification

-17.026549 (1)
-18.010565 (1)
15.994915 (1)
42.010565 (1)
57.021464 (1)

Study type

Transcription profiling by array (2590)
RNA-seq of coding RNA (388)
ChIP-seq (73)
Unknown experiment type (63)
RNA-seq of non coding RNA (43)
Methylation profiling by array (31)
RNA-seq of coding RNA from single cells (31)
Animal - High-throughput sequencing (23)
Comparative genomic hybridization by array (22)
Methylation profiling by high throughput sequencing (22)
RNA-seq of total RNA (20)
ChIP-chip by tiling array (17)
Other (17)
ChIP-chip by array (15)
Transcription profiling by SAGE (14)
MicroRNA profiling by array (14)
Animal - One-color microarray (13)
Transcription profiling by RT-PCR (12)
Cell line - High-throughput sequencing (8)
DNA-seq (8)
MicroRNA profiling by high throughput sequencing (6)
ATAC-seq (6)
Genotyping by array (5)
Transcription profiling by tiling array (4)
Cell line - One-color microarray (3)
Baseline (2)
Differential (2)
Spatial transcriptomics by high-throughput sequencing (2)
RIP-seq (2)
Ribo-seq (2)

Release Date

2014 (430)
2015 (364)
2010 (358)
2008 (343)
2013 (332)
2012 (310)
2011 (247)
2016 (246)
2009 (217)
2007 (201)
2022 (95)
2021 (95)
2023 (86)
2020 (84)
2005 (84)
2017 (77)
2018 (71)
2019 (62)
2024 (59)
2025 (51)
2006 (51)
2026 (42)
2004 (24)
2003 (6)
2002 (3)
1999 (2)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Head of Proteomics (3)
Associate professor, Department of Biomedical laboratory sciences and chemical engineering, Bergen University College, Bergen, Norway. (1)
Centre for Cancer Biomarkers CCBIO, Department of Clinical Medicine, Section for Pathology, University of Bergen, Bergen, N-5021, Norway Department of Pathology, Haukeland University Hospital, Bergen, N-5021, Norway (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Department of Biomedicine, Bramham Lab, University of Bergen, Norway (1)
Department of Cancer Research and Molecular Medicine, NTNU, N-7489 Trondheim, Norway (1)
Department of Cell and Regenerative Biology, Department of Chemistry, University of Wisconsin-Madison (1)
Department of Clinical Medicine, University of Bergen, Norway (1)
Department of Medical Biology, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway (1)
Department of Pharmacology and Neuroscience, University of North Texas Health Science Center, Fort Worth, TX 76107, USA (1)
G44, Biosciences Building| Institute of Integrative Biology University of Liverpool Crown Street | Liverpool | L69 7ZB United Kingdom (1)
General Manager of PROMEC, NTNU, Norway (1)
Institute of Agriculture and Natural Resources, Food Science and Technology, University of Nebraska-Lincoln, NE, United States (1)
Institute of Medical Biology, Faculty of Health, UiT/The Arctic University of Norway (1)
Institute of Physiology of the Czech Academy of Sciences, Laboratory of Genetics of Model Diseases (1)
Professor Institutt for klinisk og molekylær medisin Norges teknisk-naturvitenskapelige universitet Erling Skjalgssons g 1, Laboratoriesenteret * 231.05.036 Trondheim 7030 Norway (1)
Professor and Robert A. Welch Chair in Biochemistry Department of Pharmacology and Neuroscience UNT Health at Fort Worth (1)
Professor and Robert A. Welch Chair in Biochemistry Department of Pharmacology and Neuroscience UNT Helth at Fort Worth (1)
Professor and Robert A. Welch Chair in Biochemistry Department of Pharmacology and Neuroscience University of North Texas Health Science Center at FortWorth (1)
Professor and Robert A. Welch Chair in Biochemistry Department of Pharmacology and Neuroscience University of North Texas, Health Science Center (1)
Professor i molekylærbiologi og faglig leder av PROMEC Institutt for klinisk og molekylær medisin Fakultet for medisin og helsevitenskap geir.slupphaug@ntnu.no 72573076 91825455 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 (1)
Proteomics Core Facility, University of Gothenburg (1)
Renal Research Group Department of Clinical Medicine University of Bergen Norway (1)
TOR center, Department of Dentistry, Uinversity Of Bergen, Norway (1)
The Department of Biomedicine University of Bergen, Norway (1)
University of Bergen, Department of Clinical Medicine (1)
Utrecht Univeristy (1)

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Rat serum transcriptomic data

study investigated the anti-fatigue effect of the Panax ginseng–Astragali Radix (GGJ) herb pair, the core functional unit of Baoyuan Decoction, using a rat fatigue model induced by forced swimming. Serum samples were collected for untargeted metabolomics analysis by LC-MS/MS to profile differenti...

2026-06-30 | MTBLS14902 | MetaboLights

Tissue, urine and serum NMR metabolomics dataset from a 5/6 nephrectomy rat model of chronic kidney disease

Serum, urine and tissue from a rat model of chronic kidney disease (CKD) were analysed using nuclear magnetic resonance (NMR) spectroscopy-based metabolomics methods, and compared with samples from sham operated rats. Both urine and serum were sampled at multiple timepoints, and the results have ...

2020-11-16 | MTBLS2052 | MetaboLights

Serum Metabolomics in the Rat Model of Recurrent Pelvic Pain

This study aimed to investigate systemic metabolic alterations underlying pain-depression comorbidity in the Recurrent Pelvic Pain (RPP) rat model using untargeted serum metabolomics (UPLC-Q-Orbitrap-MS). Comparative analysis revealed distinct metabolic profiles, identifying 234 differential meta...

2026-02-11 | MTBLS13869 | MetaboLights

Untargeted gas chromatography–mass spectrometry-based metabolomics analysis of kidney and liver tissue from the Lewis Polycystic Kidney rat

Polycystic kidney disease (PKD) encompasses a spectrum of inherited disorders that lead to end-stage renal disease (ESRD). There is no cure for PKD and current treatment options are limited to renal replacement therapy and transplantation. A better understanding of the pathobiology of PKD is needed ...

2023-01-26 | MTBLS748 | MetaboLights

Transcription profiling of rat heart response to hypoxia treatment of parental Fawn Hooded Hypertensive (FHH) and consomic Brown Norway (FHH1BN) rat

Examination of gene expression associated with hypoxia treatment of parental Fawn Hooded Hypertensive (FHH) and consomic Brown Norway (FHH1BN) rat strain. FHH1BN rats are derived from introgression of chromosome 1 from BN rats into the FHH genetic background.

ORGANISM(S): Rattus rattus

2006-01-15 | E-TIGR-24 | biostudies-arrayexpress

Transcription profiling of rat lung response to hypoxia treatment of parental salt sensitive (SS) and consomic Brown Norway (SSYBN) rat strain

Examination of gene expression associated with hypoxia treatment of parental salt sensitive (SS) and consomic Brown Norway (SSYBN) rat strain. SSYBN rats are derived from introgression of chromosome Y from BN rats into the SS genetic background.

ORGANISM(S): Rattus rattus

2005-01-01 | E-TIGR-80 | biostudies-arrayexpress

Metabolite annotation of rat epididymis with High-resolution imaging mass spectrometry

Infertility or subfertility is a widespread problem with approximately 25% of couples seeking medical help. For about half the cases it lies in the male partner. Male infertility is caused by problems that affect sperm production, maturation and/or transport. In this study the role played by the epi...

2018-05-17 | MTBLS58 | MetaboLights

Metabolic profilings of rat INS-1 β-cells under changing levels of essential amino acids

Application of mass spectrometry enables the detection of metabolic differences between organisms with different nutritional settings. Divergence in the metabolic fingerprints of rat pancreatic INS-1 β-cells were systematically captured with regard to 10 individual essential amino acid (EAA) avai...

2022-05-24 | MTBLS3963 | MetaboLights

LipidHunter Identifies Phospholipids by High-Throughput Processing of LC-MS and Shotgun Lipidomics Datasets (Rat cardiomyocyte assay)

Lipids are dynamic constituents of biological systems, rapidly responding to any changes in physiological conditions. Thus, there is a large interest in lipid-derived markers for diagnostic and prognostic applications, especially in translational and systems medicine research. As lipid identificatio...

2018-07-31 | MTBLS483 | MetaboLights

Transcription profiling of heart during hypoxia of the Fawn Hooded Hypertensive (FHH) rat and FHH12BN consomic rat

Examination of gene expression changes during hypoxia of the Fawn Hooded Hypertensive (FHH) rat and FHH12BN consomic rat. FHH12BN rats are derived from introgression of chromosome 12 and from the Brown Norway (BN) rat into the FHH genetic background.

ORGANISM(S): Rattus norvegicus

2006-09-15 | E-TIGR-111 | biostudies-arrayexpress

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