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TranscriptomicsEspression data of control and heat-stressed Arabidopsis WT, hd2c-3, brm-1 and brm-1 hd2c-3 plants
Studies in yeast and animals have revealed that histone deacetylases (HDACs) often act as components of multiprotein complexes, including chromatin remodeling complexes (CRCs). In our group, we found evidence for the interaction between Arabidopsis HD2C deacetylase and a BRM-containing SWI/SNF chrom...
ORGANISM(S): Arabidopsis thaliana 
2015-12-04 | E-GEOD-75646 | biostudies-arrayexpress
GenomicsBisulfite sequencing of wild type Arabidopsis plants and H1 mutants
Experiment was performed to assess the effect of H1 histones knock-out on DNA methylation under control conditions and a role of H1.3 in maintaining stress-induced menthylation response.
ORGANISM(S): Arabidopsis thaliana 
2015-01-21 | E-MTAB-2807 | biostudies-arrayexpress
TranscriptomicsBarely leaf dark-induced senescence
Time-course transcriptional profiling of senescing barley leaves. In this model, the senescence process was induced by continued incubation of the seedlings in darkness. Plant samples for the expression analysis were collected before senescence induction (Day 0) and after 3,7 and 10 days of incubati...
ORGANISM(S): Hordeum vulgare 
2014-10-22 | E-GEOD-62539 | biostudies-arrayexpress
TranscriptomicsArabidopsis response to combined low light and drought conditions - transcriptomic profiling
Experiment was designed to compare the transcriptomic response of wild type and h1.3 Arabidopsis plants (Ler) to combined low light and drought conditions. H1.3 is highly upregulated by these experimental conditions
ORGANISM(S): Arabidopsis thaliana 
2015-03-31 | E-MTAB-2806 | biostudies-arrayexpress
TranscriptomicsArabidopsis response to four days of limited light treatment -
Experiment was designed to assess the transcriptomic response of wild type Arabidopsis plants (Ler) to 4 days of low light conditions.
ORGANISM(S): Arabidopsis thaliana 
2015-07-29 | E-MTAB-2803 | biostudies-arrayexpress
TranscriptomicsAnalysis of genomic distribution of three linker histone variants in Arabidopsis under normal and low light conditions, by ChIP-chip.
Linker histones (H1s) are conserved and ubiquitous structural components of eukaryotic chromatin. Multiple non-allelic variants of H1 co-exist in animals and plants, differ in their DNA/nucleosome binding properties and have been implicated in the control of genetic programs during development and d...
ORGANISM(S): Arabidopsis thaliana 
2015-07-29 | E-MTAB-2804 | biostudies-arrayexpress
ProteomicsProteomic analysis of renal cancer secretome
Introduction/aim: Renal cell cancer (RCC) is the most frequent kidney malignancy. Here, we aimed to analyze RCC secretome to find key molecules involved in tumor microenvironment regulation. Methods: Conditioned media from five RCC-derived cell lines (Caki-1, KIJ-265T, KIJ-308T, 786-O, and A498) and...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-12-02 | MSV000088490 | MassIVE
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