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ProteomicsMorpheus Spectral Counter - Morpheus spectral counter: a computational tool for label-free quantitative mass spectrometry using the morpheus search engine
Label-free quantitative mass spectrometry (MS) based on the Normalized Spectral Abundance Factor (NSAF) has emerged as a simple and reasonably robust method to determine the relative abundance of individual proteins within complex mixtures. Here, we describe Morpheus Spectral Counter (MSpC) as the ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-02-24 | PXD003002 | Pride
Proteomics Morpheus Software Bioinformatics Spectral count Label-free quantification Lc-ms/ms 
UnknownMorpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine.
Not available
S-EPMC5089804 | biostudies-literature
ProteomicsPROFILING OF PLASMA PROTEINS IN RENAL CELL CARCINOMA
A comparative analysis of the protein profile of 36 blood plasma samples from patients with kidney cancer and 20 samples of healthy volunteers was carried out using ultra-high resolution panoramic mass spectrometry. The analysis of results of measurements was conducted using OMSSA proteomic search e...
ORGANISM(S): Homo sapiens (Human) 
2019-10-23 | PXD014289 | Pride
Kidney cancer Omics Protein markers Label-free quantification Panoramic mass spectrometry Postgenomic data 
ProteomicsAnalysis of the interactome of RPS19 mutants
Ribosomal protein S19 (RPS19) is a 16-kDa protein found mainly as a component of the ribosomal 40 S subunit. Its mutations are responsible for Diamond Blackfan anemia, a congenital disease characterized by defective erythroid progenitor maturation. To clarify the function of RPS19, we compare the in...
ORGANISM(S): Homo sapiens (Human) 
2014-08-11 | PXD000640 | Pride
Diamond-blackfan anemia  protein-protein interaction in ribosome 
TranscriptomicsTranscription profiling of yeast treated with rapamycin in a 7-part time series
This experiment was a 7-part time series (or, 2x7 factorial design) examining the effect of rapamycin on gene expression in Saccharomyces cerevisiae. Treated and untreated cultures were compared at 0, 20, 40, 60, 120, 240, and 360 minutes. In the paper, expression ratios (mRNA) at each time point ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-02-05 | E-TABM-639 | biostudies-arrayexpress
ProteomicsSecretome of Bjerkandera adusta
The secretome of the white-rot fungus Bjerkandera adusta produced in synthetic Kirk medium was compared to that supplemented with an aqueous phenol-rich extract of olive mill residues (ADOR). Distinct changes in the protein composition of oxidoreductases, namely diverse class- II peroxidases and ary...
ORGANISM(S): Bjerkandera adusta 
2018-02-28 | PXD000962 | Pride
Fungi Secretome Lc-ms/ms 
UnknownMulti-locus characterization and phylogenetic inference of Leishmania spp. in snakes from Northwest China.
Not available
S-EPMC6483563 | biostudies-literature
UnknownCr2P2O7 as a Novel Anode Material for Sodium and Lithium Storage.
Not available
S-EPMC7412520 | biostudies-literature
ProteomicsBAHCC1 binds H4K20me1 to facilitate the MCM complex loading for DNA replication
Methylation of histone H4 lysine 20 (H4K20), such as H4K20 mono-methylation (H4K20me1), regulates the biological processes of DNA replication, cell cycle progression, and DNA damage repair1-4. Whereas H4K20me1 is knowingly written by SET85,6 (also known as PR-Set7) and erased by PHF87 (also known as...
ORGANISM(S): Homo sapiens (Human) 
2025-06-06 | PXD036436 | Pride
Bioid Gelc Human Nsaf 
UnknownIsothermal pressure-derived metastable states in 2D hybrid perovskites showing enduring bandgap narrowing.
Not available
S-EPMC6094100 | biostudies-literature
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