Oc - OmicsDI

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Unknown (6351)
Transcriptomics (1703)
Genomics (804)
Proteomics (703)
Metabolomics (40)
Clinical (26)
Other (14)
Methylation profiling (8)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (973)
Mus musculus (322)
Arabidopsis thaliana (87)
Drosophila melanogaster (83)
Rattus norvegicus (47)
Saccharomyces cerevisiae (42)
Caenorhabditis elegans (41)
Escherichia coli (27)
Salmo salar (15)
Triticum aestivum (12)
Oryza sativa (11)
Gallus gallus (11)
Danio rerio (11)
Solanum tuberosum (10)
synthetic construct (10)
Streptococcus pneumoniae (8)
Salmonella enterica subsp. enterica serovar Typhimurium (8)
Escherichia coli K-12 (8)
Glycine max (7)
Sus scrofa (7)
Apis mellifera (6)
Schizosaccharomyces pombe (6)
Bos taurus (6)
Candida albicans (6)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (5)
Salmonella enterica (5)
Sparus aurata (5)
Zea mays (5)
Mycobacterium tuberculosis (5)
Oncorhynchus mykiss (5)

Organisms

Homo sapiens (183)
Mus musculus (89)
Rattus norvegicus (13)
Arabidopsis thaliana (9)
Escherichia coli (7)
oil field metagenome (6)
Drosophila melanogaster (5)
Thermus thermophilus HB8 (4)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Aspergillus niger (3)
Gallus gallus (3)
Saccharomyces cerevisiae (3)
Danio rerio (3)
Solanum lycopersicum var. cerasiforme (2)
Oryza sativa Indica Group (2)
Capsicum annuum (2)
hot springs metagenome (2)
Lolium perenne (2)
Caenorhabditis elegans (2)
Macaca mulatta (2)
Zafaria cholistanensis (1)
Rickettsia prowazekii str. Madrid E (1)
Brevibacillus borstelensis cifa_chp40 (1)
Dichotomyctere nigroviridis (1)
Planococcus glaciei CHR43 (1)
Sphyrna mokarran (1)
Anaerophaga thermohalophila (1)
Erythranthe lewisii (1)
Methanotorris formicicus (1)
Pseudomonas aeruginosa TBCF10839 (1)

Repository

biostudies-arrayexpress (1660)
pride (627)
ENA (530)
geo (225)
EGA (113)
MassIVE (42)
MetaboLights (36)
iProX (14)
jPOST (9)
GPMDB (8)
GNPS (3)
PanoramaPublic (3)
Cell Collective (1)
EVA (1)
MetabolomicsWorkbench (1)
NODE (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (122)
Epithelial cell (50)
Brain (28)
Plant cell (24)
Blood plasma (19)
Permanent cell line cell (18)
Leaf (18)
Root (15)
Fibroblast (15)
Heart (15)
Blood serum (11)
T cell (10)
Shoot (9)
Cell suspension culture (9)
Liver (9)
Blood (8)
Colon (8)
Spleen (8)
Kidney (8)
Whole body (8)
Stem cell (7)
Primary cell (6)
Blood cell (6)
Lung (6)
Macrophage (6)
Photosynthetic cell (5)
Skin (5)
Ovary (4)
Stem cells (1)
Female Reproductive System (1)

Disease

Ovarian cancer (9)
Normal (6)
Osteosarcoma (4)
Ovarian tumor (2)
Ovarian carcinoma (2)
Lymphoma (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Ovarian cancer patient invasive malignant (1)
Benign nevi (1)
Model of metabolic syndrome (1)
Liver cancer (1)
Lymphoma (1)
Ischaemia reperfusion injury (1)
Papillary Carcinoma (1)
Myelolipoma (1)
Photoreceptor degeneration (1)
Mesothelioma (1)
B-cell lymphoma (1)
Breast carcinoma (invasive ductal) (1)
Invasive lobular carcinoma (1)
Small cell lung carcinoma (1)
Oral submucous fibrosis (1)
Acute myocardial infarction (1)
Hypopituitary (1)
Serous ovarian cancer (1)
Mixoid liposarcoma (1)
Chronic myelogenous leukemia (1)
Cancer (1)
Normoglycaemic (1)
Hepatocellular carcinoma (1)

Technology Type

Mass Spectrometry (628)
Shotgun proteomics (335)
Bottom-up proteomics (117)
Data-dependent acquisition (78)
Affinity purification coupled with mass spectrometry proteomics (68)
Gel-based experiment (38)
Data-independent acquisition (26)
Top-down proteomics (24)
SWATH MS (22)
Mass spectrometry assay (18)
Chemical cross-linking coupled with mass spectrometry proteomics (17)
SRM/MRM (14)
Mass spectrometry (12)
HDMSE (6)
NMR spectroscopy (5)
MSE (4)
All-ion fragmentation (4)
Illumina HiSeq 2500, ILLUMINA (3)
Aperio (2)
Illumina OncoArray (1)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina MiSeq, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq (1)
Complete Genomics, Complete Genomics - CG Build 1.4.2.8 (1)
CompleteGenomics build 1.4.2.8 - CG Build 1.4.2.8 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II, ILLUMINA (1)
Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (35)
NextSeq 500 (28)
Illumina HiSeq 4000 (22)
Illumina HiSeq 2000 (11)
Illumina HiSeq 1500 (9)
Illumina HiSeq 2500 (7)
Agilent Technologies G2565CA microarray scanner (6)
ScanArray Express HT [PerkinElmer] (5)
Axon GenePix 4000B scanning hardware (5)
NextSeq 550 (5)
Agilent High resolution C scanner (4)
Maxwell 16 Instrument (4)
Illumina Genome Analyzer IIx (4)
HiSeq X Ten (4)
Illumina MiSeq (4)
Agilent G2565AA and G2565BA Microarray Scanner (3)
GenePix Professional 4200A [Axon Instruments] (3)
G2565BA DNA microarray scanner [Agilent] (3)
Scanning hardware (3)
NextSeq 2000 (3)
Agilent scanner (2)
Tecan HS400Pro (2)
Table centrifuge (2)
Agilent Scanner G2505B (2)
GeneChip Scanner 3000 [Affymetrix] (2)
Axon- GenePix4000B (2)
Generation III Scanner (2)
Illumina Genome Analyzer II (2)
IPK PhenoSphere (1)
TruSeq RNA Library Preparation Kit v2 (1)

Publication Date

2013 (234)
2010 (204)
2011 (168)
2015 (166)
2014 (166)
2012 (156)
2025 (149)
2024 (138)
2016 (124)
2026 (123)
2022 (121)
2021 (118)
2023 (117)
2008 (116)
2020 (110)
2009 (89)
2019 (88)
2017 (70)
2018 (65)
2007 (42)
2006 (29)
2005 (18)
2004 (8)
2002 (2)

UNIPROT ID/AC

Q88R08_PSEPK (1)
PURA_PSEPK (1)
ILVC_PSEPK (1)
Q88DD0_PSEPK (1)
Q88CH2_PSEPK (1)
Q88FF0_PSEPK (1)
Q88IX4_PSEPK (1)
Q88QE5_PSEPK (1)
RSGA_PSEPK (1)
MURC_PSEPK (1)
HIS3_PSEPK (1)
Q88PI6_PSEPK (1)
Q88C77_PSEPK (1)
Q88FZ6_PSEPK (1)
Q88ET5_PSEPK (1)
Q88NX2_PSEPK (1)
Q88RK6_PSEPK (1)
Q88KZ4_PSEPK (1)
Q88CH1_PSEPK (1)
Q88QE4_PSEPK (1)
Q88NX1_PSEPK (1)
Q88C76_PSEPK (1)
MOBA_PSEPK (1)
Q88PS9_PSEPK (1)
GCSH1_PSEPK (1)
ILVD_PSEPK (1)
Q88R07_PSEPK (1)
Q88DX6_PSEPK (1)
Q88E96_PSEPK (1)
Q88IX3_PSEPK (1)

ENSEMBL ID

ENSG00000204131 (1)
ENSG00000229353 (1)
ENSG00000147251 (1)
ENSG00000247315 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:17295 (7)
CHEBI:15354 (7)
CHEBI:16919 (7)
CHEBI:15428 (7)
CHEBI:30769 (7)
CHEBI:422 (6)
CHEBI:16977 (6)
CHEBI:17895 (6)
CHEBI:18050 (6)
CHEBI:16414 (6)
CHEBI:16737 (6)
CHEBI:16113 (6)
CHEBI:17268 (6)
CHEBI:15603 (5)
CHEBI:18132 (5)
CHEBI:16857 (5)
CHEBI:17754 (5)
CHEBI:16015 (5)
CHEBI:17191 (5)
CHEBI:16027 (5)
CHEBI:70958 (4)
CHEBI:15366 (4)
CHEBI:37654 (4)
CHEBI:16010 (4)
CHEBI:16704 (4)
CHEBI:17568 (4)
CHEBI:16344 (4)
CHEBI:17634 (4)
CHEBI:17115 (4)
CHEBI:17053 (4)

Metabolite Name

Uracil (8)
Creatine (8)
L-Phenylalanine (8)
L-Valine (8)
Taurine (7)
Hypoxanthine (7)
Adenine (7)
L-Alanine (7)
L-Tyrosine (7)
L-Glutamine (7)
Pantothenic acid (7)
Creatinine (7)
Choline (7)
L-Leucine (6)
L-Lactic acid (6)
Glycerophosphocholine (6)
Glycine (6)
L-Serine (6)
L-Carnitine (6)
Cytosine (6)
L-Proline (6)
Oxypurinol (5)
Spermidine (5)
Citrulline (5)
Urea (5)
Piperidine (5)
Phytosphingosine (5)
Oleamide (5)
Betaine (5)
L-Threonine (5)

First Public Date

2014 (80)
2024 (70)
2025 (63)
2026 (51)
2023 (49)
2022 (43)
2020 (34)
2019 (33)
2021 (29)
2018 (24)
2017 (24)
2013 (14)
2015 (11)
2016 (5)

Study status

Completed (13)
Recruiting (7)
Not provided (3)
Active, not recruiting (1)
Withdrawn (1)
Not yet recruiting (1)

Lab affiliation

School of Life Sciences, University of Warwick (9)
USDA-ARS (8)
Medical Microbiology, Faculty of Medicine, University of Malaya (6)
Univeristy of Georgia (5)
Molecular Genetics, RPTU Kaiserslautern, Germany (5)
Peking University (5)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (4)
Department of Biology, University of Rochester, NY, USA (3)
Biochemistry & Molecular Biology, Michigan State University (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (3)
School of Health and Life Sciences, Teesside University, UK (3)
Carnegie MS facility (3)
Moffitt Cancer Center Tampa, FL, USA (3)
Michigan State University (3)
Department of Biochemistry and Molecular Biology Indiana University School of Medicine Indianapolis, IN (2)
Seer Inc. (2)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (2)
The University of Queensland, Australia (2)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, CA 92697, USA (2)
University of Rochester Biology Department (2)
Brigham and Women's Hospital (2)
Prof. Dr. M. Waheed Akhtar, School of Biological Sciences, University of the Punjab, Lahore, Pakistan (2)
Department of Endocrinology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China. (2)
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, National Key Laboratory of Medical Molecular Biology & Department of Immunology, No 5 Dongdan Santiao, Dongcheng district, Beijing 100005, China (2)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Department of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece (2)
School of Biomedical Sciences and Department of Pathology, The University of Hong Kong (2)
Associate professor, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) (2)

Keyword

Screening (4)
Colonoscopy (3)
Breast (2)
FIT (2)
Lung (2)
Colorectal (2)
Ovarian (2)
CRC screening (2)
Colorectal cancer surveillance (1)
Renal pelvis (1)
Ureter (1)
Urethra (1)
Castration-resistant (1)
Average-risk population (1)
Faecal occult blood tests (1)
Gemcitabine (1)
Paclitaxel (1)
Cisplatin (1)
NT-I7 (Efineptakin alfa) (1)
Non-small Cell Lung (1)
Small Cell Lung (1)
Programmed cell death protein (PD-1) (1)
Kidney (1)
Molecular subtypes (1)
Not yet available (1)
Intplex (1)
Stomach (1)
Multi-omics (1)
Advanced neoplasia (1)
Fecal (1)

Classification

bacteria (19)
fungi (3)

Modification

Not available (2)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (1052)
RNA-seq of coding RNA (128)
ChIP-seq (107)
ChIP-chip by tiling array (46)
Comparative genomic hybridization by array (45)
Transcription profiling by RT-PCR (32)
Other (32)
Methylation profiling by array (29)
RNA-seq of non coding RNA (25)
Unknown experiment type (16)
RNA-seq of coding RNA from single cells (16)
ChIP-chip by array (14)
Transcription profiling by tiling array (12)
Genotyping by array (12)
MicroRNA profiling by array (12)
Methylation profiling by high throughput sequencing (10)
RNA-seq of total RNA (9)
DNA-seq (8)
Cell line - One-color microarray (7)
Proteomic profiling by array (6)
Translation profiling (5)
High-throughput sequencing (4)
Cell line - High-throughput sequencing (4)
Capture-C (3)
Transcription profiling by SAGE (2)
Two-color microarray (2)
One-color microarray (2)
Human - High-throughput sequencing (2)
Human - One-color microarray (2)
Animal - High-throughput sequencing (2)

Release Date

2025 (822)
2022 (813)
2023 (784)
2021 (737)
2024 (688)
2020 (590)
2019 (395)
2015 (337)
2013 (334)
2018 (314)
2016 (312)
2014 (309)
2017 (305)
2010 (257)
2011 (233)
2012 (219)
2008 (139)
2009 (134)
2026 (113)
2007 (64)
2006 (44)
2005 (27)
2004 (14)
2003 (9)
2002 (6)
1999 (5)
1998 (5)
2001 (1)
2000 (1)

Location

Netherlands (7)
United States (7)
Italy (4)
France (4)
United Kingdom (3)
Spain (3)
Germany (2)
Belgium (2)
Australia (1)
Canada (1)
China (1)
Japan (1)

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Formivibrio sp. oc-25

Formivibrio sp. oc-25 Genome sequencing

PRJNA1432675 | ENA

Expression data from human OC+BAP+ double positive versus OC-BAP- double negative cells

Subpopulation of circulating monocyte/macrophage lineage cells show a calcifying ability in vivo and in vitro. These cells may contribute to intimal calcification within atherosclerotic lesions and may have pathophysiological clinical and therapeutic implication in vascular disorders. Such cells exp...

ORGANISM(S): Homo sapiens

2013-05-17 | E-GEOD-47060 | biostudies-arrayexpress

OC-MS/MS - HSP60-regulated Mitochondrial Proteostasis and Protein Translation Promote Tumor Growth of Ovarian Cancer

Ovarian cancer (OC) is the most lethal gynecological carcinoma because of the lack of early diagnostic markers and effective drug targets. Discovery of new therapeutic targets in OC to improve the treatment outcome is urgently needed. Patients with recurrent EOC after initial therapy have few treatm...

ORGANISM(S): Homo sapiens (Human)

2019-09-09 | PXD013811 | Pride

Ms/ms Oc

low temperature (10 oC) microbial fuel cells

low temperature (10 oC) microbial fuel cells Metagenome

PRJNA545591 | ENA

Genomic characterization of ovarian cancer spheroids

Spheroids are 3D multi-cell aggregates formed in non-addherent culture conditions. In ovarian cancer (OC), they serve as a vehicle for cancer cell dissemination in the peritoneal cavity. We investigated genes and networks upregulated in three dimensional (3D) versus two-dimensional (2D) culture cond...

ORGANISM(S): Homo sapiens

2014-01-03 | E-GEOD-53759 | biostudies-arrayexpress

Expression data from OL and OC treated B16F10 cells

PRJNA995550 | ENA

Vibrio coralliilyticus strain:Vic-OC-068

Vibrio coralliilyticus strain:Vic-OC-068 Genome sequencing and assembly

PRJNA632838 | ENA

Vibrio mediterranei strain:Vic-OC-097

Vibrio mediterranei strain:Vic-OC-097 Genome sequencing and assembly

PRJNA632837 | ENA

Expression data from human OC+BAP+ double positive versus OC-BAP- double negative cells

ORGANISM(S): Homo sapiens