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TranscriptomicsStpA and H-NS ChIP-chip analysis
StpA and H-NS distribution in Escherichia coli
ORGANISM(S): Escherichia coli 
2009-03-13 | E-MEXP-1880 | biostudies-arrayexpress
TranscriptomicsReference Design time-course
E.coli K-12 W3110 was grown in LB medium and harvested at each time point. And time series microarray experiments were performed based on reference desgin. In reference design, the control sample is collected at one representative time point. Combining with data from sequential design, more acculate...
ORGANISM(S): Escherichia coli 
2011-03-31 | E-GEOD-6033 | biostudies-arrayexpress
ModelsTakahashi2015 - Zinc regulation E.coli
This a model from the article: The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress Takahashi H, Oshima T, Doherty N, Clayton SR, Iqbal M, Hill PJ, Hobman JL, Tobe T, Ogasawara N, Kanaya S and St...
2016-02-10 | MODEL1502180000 | BioModels
TranscriptomicsChromatin immunoprecipitation of Bacillus subtilis to identify Noc protein binding sites
Coordination of chromosome segregation and cytokinesis is crucial for efficient cell proliferation. In Bacillus subtilis the nucleoid occlusion protein Noc protects chromosomes by associating with the chromosome and preventing cell division in its vicinity. Using protein localization, ChAP-on-Chip a...
ORGANISM(S): Bacillus subtilis 
2009-07-01 | E-MEXP-2133 | biostudies-arrayexpress
TranscriptomicsChAP-chip analysis of Hha binding regions in wild type and hnsstpA E. coli cells
The analysis of the distribution of Hha binding regions (His-Hha were expressed from pQE plasmid) on E. coli chromosome in E. coli W3110 (wild type) and hns/stpA mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-02 | E-MEXP-3813 | biostudies-arrayexpress
TranscriptomicsChIP-chip analysis for H-NS binding sites in wild type and hhaydgT cells
Analysis of the distribution of the binding regions of the H-NS protein in E. coli W3110 and W3110hhaydgT mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-04 | E-MEXP-3812 | biostudies-arrayexpress
TranscriptomicsRegulation of initiation of chromosome replication by oriC-proximal DnaA-box clusters in Bacillus subtilis
Comparison of transcriptions in wild_type, delta-6 (deletion of six DnaA-box clusters (DBCs)), delta-5 and delta-DBC[yydA-yycS] strains, to see effect of the DBCs on transcription of neighboring genes and DnaA-regulated genes.
ORGANISM(S): Bacillus subtilis 
2011-07-01 | E-MEXP-3069 | biostudies-arrayexpress
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