Ogawa H H - OmicsDI

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Unknown (2351)
Transcriptomics (95)
Proteomics (52)
Genomics (16)
Metabolomics (7)
Models (2)

Organisms

Homo sapiens (90)
Mus musculus (36)
Saccharomyces cerevisiae (12)
Rattus norvegicus (4)
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Arabidopsis thaliana (3)
Rhodococcus jostii RHA1 (2)
Pseudomonas putida KT2440 (2)
Lactiplantibacillus plantarum (1)
Rattus (1)
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Drosophila melanogaster (1)
cellular organisms (1)
Anneissia japonica (1)
Canis lupus familiaris (1)
Gallus gallus (1)

Organisms

Sus scrofa (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (95)
jPOST (37)
pride (15)
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MetaboLights (7)
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geo (2)
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Tissue

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Disease

Colon cancer (1)
Endocervical adenocarcinoma (1)
Liver cirrhosis (1)
Myelodysplastic syndrome (1)
Myeloid leukemia (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (11)
Mass spectrometry (6)
Bottom-up proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Affymetrix_250K(Nsp) - gtype (1)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
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SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2000 (2)
GCT Premier (Waters) (2)
CytAssist (1)
Illumina NovaSeq X (1)
HiSeq X Ten (1)
NextSeq 500 (1)
Gas Chromatography MS - positive - low polarity - GC-MS (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - (1)

Publication Date

2016 (34)
2013 (15)
2010 (14)
2005 (12)
2015 (12)
2014 (10)
2012 (10)
2011 (10)
2024 (5)
2021 (5)
2026 (4)
2025 (4)
2023 (4)
2006 (3)
2004 (3)
2017 (3)
2022 (3)
2008 (2)
2019 (1)
2009 (1)
2007 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:16027 (3)
CHEBI:16335 (3)
CHEBI:16704 (3)
CHEBI:16857 (3)
CHEBI:17053 (3)
CHEBI:17295 (3)
CHEBI:17895 (3)
CHEBI:18012 (3)
CHEBI:26078 (3)
CHEBI:30915 (3)
CHEBI:32805 (3)
CHEBI:6650 (3)
CHEBI:14314 (2)
CHEBI:14336 (2)
CHEBI:15603 (2)
CHEBI:15756 (2)
CHEBI:15824 (2)
CHEBI:15891 (2)
CHEBI:15963 (2)
CHEBI:16000 (2)
CHEBI:16010 (2)
CHEBI:16015 (2)
CHEBI:16113 (2)
CHEBI:16414 (2)
CHEBI:16668 (2)
CHEBI:16680 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)

Metabolite Name

D-Fructose (2)
L-Alanine (2)
L-Leucine (2)
L-Tyrosine (2)
N-Acetyl-L-glutamic acid (2)
Serine (2)
Taurine (2)
Uridine (2)
(+-)-Baclofen (1)
(3E)-3-Benzylidene-4-Methyl-1H-1,4-Benzodiazepine-2,5-Dione (1)
(5R)-5-Hydroxy-1-(4-Hydroxy-3-Methoxyphenyl)Tetradecan-3-One (1)
(R)-3-Hydroxybutanoate (1)
1,2-Dihydroxyheptadec-16-En-4-Yl Acetate (1)
1,3-Dideacetyl-7-Deacetoxy-7-Oxokhivorin (1)
1,4-Cyclohexanedicarboxylic Acid (1)
1,8,9-Anthracenetriol (1)
1-Hydroxy-2-Naphthoic Acid (1)
1-Hydroxyanthraquinone (1)
1-Kestose (1)
16-Hydroxypalmitate (1)
2,4-Dihydroxybenzophenone (1)
2,4-Dinitrophenol (1)
2,5-Dihydroxy-3-Undecylcyclohexa-2,5-Diene-1,4-Dione (1)
2-Hydroxybenzaldehyde (1)
2-Hydroxyisocaproic Acid (1)
2-Naphthalene Sulfonic Acid (1)
2-Oxoglutarate (1)
2-hydroxypyridine (1)
2-oxoglutaric acid (1)
2-phospho-D-glyceric acid (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

First Public Date

2014 (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (59)
Methylation profiling by array (9)
RNA-seq of coding RNA (8)
Comparative genomic hybridization by array (6)
Genotyping by array (5)
Unknown experiment type (3)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (301)
2025 (271)
2023 (255)
2021 (245)
2024 (188)
2020 (179)
2018 (140)
2019 (138)
2015 (108)
2017 (106)
2016 (87)
2014 (80)
2013 (65)
2026 (47)
2012 (45)
2011 (40)
2010 (38)
2009 (32)
2005 (21)
2008 (17)
2007 (9)
2006 (9)
2001 (9)
2003 (5)
2004 (3)
2000 (3)
1998 (2)
2002 (1)
1999 (1)
1997 (1)

Lab affiliation

Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
California State University Long Beach (1)
Cellular Dynamics Laboratory, RIKEN Cluster for Pioneering Research (CPR),Saitama 3510198, Japan. Present address:Jikei University of Health Care Sciences, Graduate School of Medical Safety Management, Osaka, Japan. (1)
Center for Disease Proteomics, Kitasato University School of Science, 1-15-1 Kitasato, Minami-ku, Sagamihara, Kanagawa 252-0373, Japan. (1)
College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, PKU-IDG/McGovern Institute for Brain Research, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Peking University, Beijing, Academy for Advanced Interdisciplinary Studies, PKU-Tsinghua Center for Life Science, Peking University, Beijing 100871, China (1)
Department of Neuroscience Baylor College of Medicine Houston, TX US (1)
Division of Biological Science, Graduate School of Science, Nagoya University (1)
Division of Gastroenterology and Hepatology, Graduate School of Medical and Dental Sciences, Niigata University (1)
Division of Molecular Hematology, Department of Laboratory Medicine, Lund Stem Cell Center, Faculty of Medicine, Lund University, Lund, Sweden (1)
Federal Research Institute for Animal Health Germany (1)
Laboratory for Biomarker Development (1)
Laboratory for Mucosal Immunity, Center for Integrative Medical Sciences, RIKEN Yokohama Institute, Yokohama, Japan (1)
Memorial Sloan Kettering Cancer Center, Department of pathology (1)
kochi university (1)

Tags

xref:PubMed:16180142 (1)
xref:PubMed:16143103 (1)

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Seed Metabolome Analysis of a Transgenic Rice Line Expressing Cholera Toxin B-subunit

Rice (Oryza sativa L.) is a candidate crop for production of plant-based vaccines by genetic engineering technologies. MucoRice-CTB has been developed as a rice-seed-based vaccine against cholera by transgenic expression of modified cholera toxin B-subunit (CTB) under the RNA interference (RNAi)-med...

2017-08-30 | MTBLS437 | MetaboLights

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

Not available

S-EPMC1538819 | biostudies-literature

Sequence polymorphisms of rfbT among the Vibrio cholerae O1 strains in the Ogawa and Inaba serotype shifts.

Not available

S-EPMC3727987 | biostudies-literature

Generation and Characterization of Monoclonal Antibodies to the Ogawa Lipopolysaccharide of Vibrio cholerae O1 from Phage-Displayed Human Synthetic Fab Library.

Not available

S-EPMC9728160 | biostudies-literature

H-type dimer formation of fluorophores: a mechanism for activatable, in vivo optical molecular imaging.

Not available

S-EPMC2743556 | biostudies-literature

Identification of human minor H antigens based on genotyping of pooled DNA

Minor histocompatibility (H) antigens are the molecular targets of allo-immunity responsible both for the development of anti-tumor effects and for graft-versus-host disease (GVHD) in allogeneic hematopoietic stem cell transplantation (allo-HSCT). However, despite their potential clinical use, our ...

ORGANISM(S): Homo sapiens

2007-12-31 | E-GEOD-10044 | biostudies-arrayexpress

comparison of mRNA expression among rat hepatoma cell lines with different metastatic ability

To reduce cancer mortality, understanding of mechanisms of cancer metastasis is crucial. We have established 6 rat hepatocellular carcinoma (HCC) cell lines, which exhibit differing metastatic potential to the lung after inoculation into the tail veins of nude mice. Micorarray analysis of 4 kinds of...

ORGANISM(S): Rattus norvegicus

2012-06-20 | E-GEOD-30469 | biostudies-arrayexpress

Type 2C protein phosphatase clade D family members dephosphorylate guard cell plasma membrane H+-ATPase.

Not available

S-EPMC8968332 | biostudies-literature

High sensitivity detection of cancer in vivo using a dual-controlled activation fluorescent imaging probe based on H-dimer formation and pH activation.

Not available

S-EPMC3464101 | biostudies-literature

Single Circular Chromosome Identified from the Genome Sequence of the Vibrio cholerae O1 bv. El Tor Ogawa Strain V060002.

Not available

S-EPMC6013637 | biostudies-literature