Oliver A A - OmicsDI

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Unknown (3762)
Transcriptomics (483)
Proteomics (252)
Genomics (215)
Metabolomics (47)
Models (35)
Genomic (3)
Other (3)
Multiomics (1)

Organisms

Homo sapiens (327)
Mus musculus (200)
Saccharomyces cerevisiae (82)
Drosophila melanogaster (29)
Arabidopsis thaliana (28)
Rattus norvegicus (20)
Candida albicans (10)
Escherichia coli (9)
Danio rerio (8)
Sus scrofa (8)
Listeria monocytogenes (4)
Caenorhabditis elegans (3)
Saccharomyces cerevisiae S288C (2)
Chlamydomonas reinhardtii (2)
Drosophila pseudoobscura (2)
synthetic construct (2)
Medicago truncatula (2)
Zea mays (2)
Geobacter sulfurreducens (2)
Bos taurus (2)
Ovis aries (2)
Komagataella phaffii GS115 (1)
Drosophila hawaiiensis (1)
Caenorhabditis japonica (1)
Drosophila rhopaloa (1)
Saccharomyces cerevisiae W303 (1)
Drosophila ficusphila (1)
Gorilla gorilla gorilla (1)
Vitis sp. cv. 'Norton' (1)
Drosophila mojavensis (1)

Organisms

Mus musculus (18)
Arabidopsis thaliana (6)
Cyclura pinguis (3)
Hippopotamus amphibius kiboko (3)
Gopherus evgoodei (3)
Corvus hawaiiensis (3)
Gavialis gangeticus (3)
Nycticebus coucang (3)
Mantella aurantiaca (3)
Natator depressus (3)
Microtus pennsylvanicus (3)
Tapirus indicus (3)
Rhea pennata (3)
Eucommia ulmoides (3)
Caenorhabditis elegans (3)
Leptographium clavigerum (1)
Syntrichia ruralis (1)
Salmonella enterica subsp. enterica serovar Heidelberg (1)
Linum usitatissimum (1)
Listeria monocytogenes (1)
Saccharomyces cerevisiae (1)
Plasmodium berghei (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Parastagonospora nodorum (1)
Sus scrofa (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (505)
pride (155)
EGA (97)
ENA (87)
MassIVE (73)
BioModels (32)
GNPS (24)
MetaboLights (23)
geo (10)
PAXDB (9)
PeptideAtlas (7)
PanoramaPublic (5)
jPOST (4)
dbGaP (3)
FAIRDOMHub (3)
GPMDB (2)

Tissue

Cell culture (19)
Brain (10)
Epithelial cell (8)
T cell (8)
B cell (5)
Blood plasma (5)
Heart (5)
Kidney (5)
Others (4)
Blood (4)
Fibroblast (4)
Microglial cell (4)
Cell suspension culture (3)
Liver (3)
Permanent cell line cell (3)
Spleen (3)
Blood cell (2)
Bone marrow (2)
Colon (2)
Extracellular vesicle (2)
Leukocyte (2)
Lung (2)
Lymph node (2)
Ovarian serous carcinoma cell (2)
Skin (2)
Adipose tissue (1)
Astrocyte (1)
Blood serum (1)
Breast (1)
HEK-293 cell (1)

Disease

Acute leukemia (5)
Breast cancer (4)
Colon adenocarcinoma (2)
Neuroblastoma (2)
Chronic myeloid leukemia (2)
Not Available (2)
Brain cancer (2)
Colon cancer (2)
Influenza (2)
Myocardial ischemia (2)
Alzheimer's disease (1)
Cancer (1)
Fibrosarcoma (1)
Sham treated (1)
Perilesional skin (hair) (1)
Acute lymphoblastic leukemia (1)
Endometriosis (1)
Chronic myelogenous leukemia (1)
Acute promyelocytic leukemia (1)
Lung squamous cell carcinoma (1)
Wilms tumour (1)
Normal (1)
Ampulla of Vater cancer (1)
Amyotrophic lateral sclerosis (1)
Autism spectrum disorder (1)
Autosomal recessive polycystic kidney disease (1)
B-cell lymphoma (1)
Bone marrow (1)
Brain meningioma (1)
Cardiovascular system disease (1)

Technology Type

Mass Spectrometry (155)
Shotgun proteomics (79)
Affinity purification coupled with mass spectrometry proteomics (41)
Gel-based experiment (26)
Bottom-up proteomics (25)
Mass spectrometry (19)
Data-dependent acquisition (11)
Illumina 15K (8)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Data-independent acquisition (6)
SWATH MS (5)
Illumina HiSeq 2000 (4)
Mass spectrometry assay (3)
Top-down proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2000 (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Codelink Human Whole Genome Bioarray (1)
ILLUMINA, Illumina HiSeq 2000 (1)
ION_TORRENT, Ion Torrent Proton (1)
Illumina 450K (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays (1)
Illumina OmniExpress v1.0-Illumina GenomeStudio, Illumin OmniExpress v1.0 - Illumina GenomeStudio (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2500 (12)
Illumina NovaSeq 6000 (12)
Illumina HiSeq 4000 (9)
Q-TOF - POSITIVE (9)
Pegasus (7)
Q-TOF - NEGATIVE (7)
Illumina HiSeq 2000 (5)
NextSeq 500 (5)
ScanArray 4000 [PerkinElmer] (4)
AB SOLiD 4 System (4)
Illumina Genome Analyzer II (3)
Orbitrap Astral (3)
Illumina HiScanSQ (2)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer IIx (2)
Illumina MiSeq (2)
Hamamatsu Nanozoomer S60 (1)
Ribo-Zero Plant rRNA removal kit (Illumina); TruSeq Stranded Total RNA LT kit (Illumina) (1)
RNeasy Plant Mini Kit (QIAGEN) (1)
2D clinostat (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
GenePix 4000A [Axon Instruments] (1)
G2505A DNA microarray scanner [Agilent] (1)
418 [Affymetrix] (1)
Ion Torrent PGM (1)
GridION (1)
Illumina HiSeq 1500 (1)

Publication Date

2010 (82)
2011 (60)
2015 (55)
2014 (53)
2016 (51)
2013 (50)
2020 (47)
2021 (40)
2012 (39)
2024 (33)
2022 (33)
2017 (33)
2025 (33)
2008 (33)
2023 (28)
2005 (28)
2018 (28)
2019 (27)
2007 (26)
2009 (25)
2026 (23)
2006 (13)
2004 (2)

UNIPROT ID/AC

P31688 (15)
P32861 (15)
P33401 (15)
P37012 (15)
Q00764 (15)
O13525 (2)
P00044 (2)
P00045 (2)
P00127 (2)
P00128 (2)
P00163 (2)
P00175 (2)
P00330 (2)
P00331 (2)
P00358 (2)
P00359 (2)
P00360 (2)
P00401 (2)
P00410 (2)
P00420 (2)
P00424 (2)
P00425 (2)
P00427 (2)
P00431 (2)
P00498 (2)
P00549 (2)
P00560 (2)
P00572 (2)
P00635 (2)
P00724 (2)

ENSEMBL ID

ENSG00000170477 (4)
ENSG00000147251 (2)
ENSG00000247315 (2)

CHEBI ID

CHEBI:16027 (26)
CHEBI:16761 (25)
CHEBI:15343 (22)
CHEBI:16236 (22)
CHEBI:16551 (22)
CHEBI:17754 (22)
CHEBI:17794 (22)
CHEBI:18021 (22)
CHEBI:15361 (21)
CHEBI:15422 (21)
CHEBI:15846 (21)
CHEBI:16001 (21)
CHEBI:16108 (21)
CHEBI:16908 (21)
CHEBI:17835 (21)
CHEBI:30031 (21)
CHEBI:4167 (21)
CHEBI:28602 (20)
CHEBI:29052 (20)
CHEBI:16084 (19)
CHEBI:17665 (19)
CHEBI:28013 (19)
CHEBI:15978 (17)
CHEBI:16077 (15)
CHEBI:17659 (15)
CHEBI:18066 (15)
CHEBI:18283 (15)
CHEBI:30089 (14)
CHEBI:46398 (14)
CHEBI:28087 (9)

Metabolite Name

Inosine (5)
Arachidonic acid (4)
Cytidine (4)
Hypoxanthine (4)
Lysine (4)
Methionine (4)
Pantothenic acid (4)
Phenylalanine (4)
Phosphoric acid (4)
Proline (4)
Serine (4)
Succinic acid (4)
Tyrosine (4)
2-hydroxyglutaric acid (3)
2-ketoglutaric acid (3)
ADP (3)
AMP (3)
Adenosine (3)
Arginine (3)
Cholic acid (3)
Choline (3)
Citric acid (3)
Citrulline (3)
Creatine (3)
Creatinine (3)
Enterolactone (3)
Glucose (3)
Glyceric acid (3)
Glycine (3)
Hippuric acid (3)

First Public Date

2023 (30)
2025 (10)
2024 (9)
2014 (8)
2026 (5)
2018 (5)
2021 (4)
2016 (4)
2019 (3)
2022 (2)
2020 (2)
2015 (2)
2013 (2)
2017 (1)

Modelling Approach

Ordinary differential equation model (26)
Constraint-based model (1)

Lab affiliation

Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (3)
Georg-August-University Göttingen, Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics (3)
Georg-August University, Institute of Microbiology and Genetics, Department of Genetics of Eukaryotic Microorganisms (2)
Georg-August-University Göttingen Department of Molecular Microbiology and Genetics Institute of Microbiology and Genetics (2)
Insitute for Molecular Medicine and Cell Research, University of Freiburg, Germany (2)
Institute for Surgical Pathology, Medical Center and Faculty of Medicine - University of Freiburg, Freiburg, Germany (2)
Institute of Molecular Medicine and Cell Research University of Freiburg Stefan-Meier-Str. 17, D-79104 Freiburg, Germany (2)
Institute of Molecular Medicine and Cell Research, University Freiburg (2)
Max Delbrueck Center for Molecular Medicine (2)
PD Dr. Oliver Schilling Heisenberg Fellow Institute of Molecular Medicine and Cell Research University of Freiburg Stefan-Meier-Str. 17, Room 02 027 D-79104 Freiburg, Germany +49 761 203 9615 oliver.schilling@mol-med.uni-freiburg.de (2)
Prof. Dr. Oliver Schilling Heisenberg Professor of Translational Proteomics Institute of Surgical Pathology Faculty of Medicine University of Freiburg Breisacher Strasse 115a D-79106 Freiburg, Germany +49 761 27080610 oliver.schilling@mol-med.uni-freiburg.de (2)
University of Freiburg (2)
University of Göttingen, Institute of Microbiology and Genetics, Department of Molecular Microbiology and Genetics (2)
Universitätsmedizin Mainz, Germany (2)
-Harry Perkins Institute of Medical Research, Nedlands, Western Australia 6009, Australia -School of Pharmacy and Biomedical Sciences, Curtin University, Bentley, Western Australia 6102, Australia -Curtin Health Innovation Research Institute, Curtin University, Bentley, WA 6102, Australia (1)
1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 4. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany; (1)
1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Quantitative Biology Center (QBiC), University of Tübingen, Germany; 4. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 5. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
BioArCh, Department of Archaeology, University of York (1)
Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; Quantitative Biology Center (QBiC), University of Tübingen, Germany; Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany; (1)
Breast Cancer Clinical Research Unit, CNIO, Spanish National Cancer Research Centre, Spain (1)
CRG/UPF (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, United Kingdom (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 Office: 267-426-2839 Fax: 267-426-5165 (1)
Cellular & Molecular Metabolism Laboratory, Drug Discovery Biology, Monash Institute of Pharmaceutical Sciences, Monash University. (1)
Center for Bioinformatics, Quantitative Biology Center and Department of Computer Science, University of Tübingen, Sand 14, 72076 Tübingen, Germany Max Planck Institute for Developmental Biology, Spemannstr. 35, 72076 Tübingen, Germany (1)
Center for Medical Research, University of Linz, Austria (1)
Center for Translational Research, Children’s National Research Institute, Children’s National Hospital, Washington,DC, United States & Children’s Hospital of Philadelphia, Philadelphia, PA, United States (1)

IsPrivate

False (32)

Model Flag

Non Kinetic (4)

Classification

bacteria (2)
protozoa (1)
viruses (1)

Modification

28.0313 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
57.021464 (1)
87.998286 (1)

Study type

Transcription profiling by array (282)
RNA-seq of coding RNA (72)
ChIP-seq (26)
Comparative genomic hybridization by array (17)
RNA-seq of non coding RNA (14)
ChIP-chip by tiling array (11)
RNA-seq of coding RNA from single cells (11)
ChIP-chip by array (10)
Other (10)
Methylation profiling by array (10)
Unknown experiment type (6)
Transcription profiling by tiling array (6)
Genotyping by array (6)
Methylation profiling by high throughput sequencing (4)
Animal - High-throughput sequencing (3)
Animal - One-color microarray (2)
CLIP-Seq (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Translation profiling (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Trajectory (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (428)
2025 (359)
2023 (357)
2021 (352)
2024 (320)
2020 (277)
2019 (262)
2017 (220)
2016 (219)
2018 (205)
2014 (186)
2015 (183)
2010 (147)
2013 (143)
2011 (129)
2012 (125)
2008 (74)
2009 (68)
2026 (63)
2007 (56)
2006 (25)
2005 (23)
2004 (14)
2003 (10)
2002 (4)
2001 (4)
2000 (4)
1999 (2)
1998 (1)
1981 (1)

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Growth control of the eukaryote cell: a systems biology study in yeast

Metabolic control analysis is being exploited in a systems biology study of the eukaryotic cell. Using chemostat culture, we have measured the impact of changes in flux (growth rate) on the transcriptome, proteome, endometabolome and exometabolome of the yeast Saccharomyces cerevisiae. Each function...

2012-04-19 | MTBLS8 | MetaboLights

A homeostatic switch causing glycerol-3-phosphate and phosphoethanolamine accumulation triggers senescence by rewiring lipid metabolism

Cellular senescence affects many physiological and pathological processes and is characterized by durable cell cycle arrest, an inflammatory secretory phenotype and metabolic reprogramming. Here, by using dynamic transcriptome and metabolome profiling in human fibroblasts with different subtypes ...

2024-01-09 | MTBLS7118 | MetaboLights

A multi-omic analysis of birthweight in newborn cord blood reveals new underlying mechanisms related to cholesterol metabolism

BACKGROUND: Birthweight reflects in utero exposures and later health evolution. Despite existing studies employing high-dimensional molecular measurements, the understanding of underlying mechanisms of birthweight remains limited.

METHODS: To investigate th...

2020-06-19 | MTBLS1684 | MetaboLights

Trait Variations and Probability Grading Index System on Leaf-Related Traits of Eucommia ulmoides Oliver Germplasm.

Not available

S-EPMC8620490 | biostudies-literature

Adams Oliver syndrome: Description of a new phenotype with cerebellar abnormalities in a family.

Not available

S-EPMC3908514 | biostudies-literature

A Case of Adams-Oliver Syndrome.

Not available

S-EPMC5767801 | biostudies-literature

Phenotypic Trait Subdivision Provides New Sight Into the Directional Improvement of Eucommia ulmoides Oliver.

Not available

S-EPMC9026163 | biostudies-literature

Identification of pre-diagnostic lipid sets associated with liver cancer risk using untargeted lipidomics and chemical set analysis – a nested case-control study within the ATBC cohort

In pre-disposed individuals, a reprogramming of the hepatic lipid metabolism may support liver cancer initiation. We conducted a high-resolution mass spectrometry based untargeted lipidomics analysis of pre-diagnostic serum samples from a nested case-control study (219 liver cancer cases and 219 ...

2023-09-18 | MTBLS7776 | MetaboLights

Expression Profiling to Identify Novel Desiccation Response Transcripts from Tortula ruralis gametophytes

In this study we have tried to utilize the unique aspects of the T. ruralis response to desiccation and rehydration to design a strategy to identify rehydrins that are of low abundance and perhaps completely novel to the desiccated or rehydration transcriptomes. We have constructed two Subtractive S...

ORGANISM(S): Syntrichia ruralis

2010-05-06 | E-GEOD-13680 | biostudies-arrayexpress

Hif1α down-regulation is associated with transposition of great arteries in mice treated with a RA antagonist

Aims: Congenital heart defect (CHD) account for 25% of all human congenital abnormalities. Very few CHD-causing genes have been identified so far; so, to discover further genes we performed a global transcriptome analysis in mouse models of CHD. Methods and results: By the use of a retinoic acid com...

ORGANISM(S): Mus musculus

2010-09-20 | E-GEOD-19012 | biostudies-arrayexpress

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