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TranscriptomicsTranscriptional analyses of the ectomycorrhizal (ECM) fungus Paxillus involutus during growth on various lignocellulose soil substrates
In this study, examinations were performed on how the ECM fungus Paxillus involutus degrade complex, plant and litter material by using elemental analyses, FTIR spectroscopy, pyrolysis-GC/MS, and synchronous fluorescence spectroscopy together with microarray analyses screening 12,214 gene models, de...
ORGANISM(S): Paxillus involutus 
2012-02-01 | E-GEOD-34402 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse small intestinal crypt-villus axis
Genes encoding transcription factors function as hubs in gene regulatory networks because they encode DNA-binding proteins, which bind to promoters that carry their binding sites. In the present work we have studied gene regulatory networks defined by genes with transcripts belonging to different mR...
ORGANISM(S): Mus musculus 
2008-06-12 | E-GEOD-3216 | biostudies-arrayexpress
GenomicsGenomic and Proteomic Analyses of Prdm5 Reveal Interactions with Insulator Binding Proteins in Embryonic Stem Cells (ChIP-seq)
PRDM proteins belong to the SET domain protein family, which is involved in the regulation of gene expression. Although few PRDM members possess histone methyltransferase activity, the molecular mechanisms by which the other members exert transcriptional regulation remain to be delineated. In this s...
ORGANISM(S): Mus musculus 
2013-10-31 | E-GEOD-51816 | biostudies-arrayexpress
ProteomicsFully automated workflow for integrated sample digestion and Evotip loading enabling high-throughput clinical proteomics
Protein identification and quantification is an important tool for biomarker discovery. With the increased sensitivity and speed of modern mass spectrometers, sample-preparation remains a bottleneck for studying large cohorts. To address this issue, we prepared and evaluated a simple and efficient w...
ORGANISM(S): Homo sapiens (Human) 
2024-06-12 | PXD048325 | Pride
Automation Plasma proteomics Dia Biomarkers 
TranscriptomicsGenomic and Proteomic Analyses of Prdm5 Reveal Interactions with Insulator Binding Proteins in Embryonic Stem Cells (RNA-seq)
PRDM proteins belong to the SET domain protein family, which is involved in the regulation of gene expression. Although few PRDM members possess histone methyltransferase activity, the molecular mechanisms by which the other members exert transcriptional regulation remain to be delineated. In this s...
ORGANISM(S): Mus musculus 
2013-10-31 | E-GEOD-51553 | biostudies-arrayexpress
UnknownExtracellular vesicles and microRNAs are altered in response to exercise, insulin sensitivity and overweight.
Not available
S-EPMC9788120 | biostudies-literature
ProteomicsTreatment with Cefotaxime Affects Expression of Conjugation Associated Proteins and Conjugation Transfer Frequency of an IncI1 Plasmid in Escherichia coli
Horizontal gene transfer (HGT) is the major mechanism responsible for spread of antibiotic resistance. Antibiotic treatment has been suggested to promote HGT, either by directly affecting the conjugation process itself or by selecting for conjugations subsequent to DNA transfer. However, recent rese...
ORGANISM(S): Escherichia coli 
2017-11-21 | PXD006679 | Pride
Antibiotics Proteomics Escherichia coli Itraq 
UnknownHarnessing the glycolysis-TCA cycle axis to boost host defense against neonatal infection
Not available
S-SCDT-10_1038-S44321-026-00463-Z | biostudies-other
ProteomicsProSeAM SILAC MS screening for METTL9 substrates
Click chemistry based substrates screening for METTL9 in Mettl9 KO MEF cells.
ORGANISM(S): Mus Musculus (mouse) 
2020-11-19 | PXD016823 | JPOST Repository
UnknownAntiretroviral prophylaxis for HIV prevention in heterosexual men and women.
Not available
S-EPMC3770474 | biostudies-literature
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