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TranscriptomicsStudies on the production of fungal polyketides in Aspergillus nidulans using systems biology tools
Using genetic engineering tools available for the model organism Aspergillus nidulans, we constructed two recombinant strains; one expressing the model polyketide Penicillium griseofulvum 6-methylsalicylic acid (6-MSA) polyketide synthase gene, and one expressing the 6-MSA gene and overexpressing th...
ORGANISM(S): Emericella nidulans 
2009-02-27 | E-GEOD-12859 | biostudies-arrayexpress
ProteomicsThermothielavioides terrestris secretome after growth on raw and mildly steam-pretreated spruce
One important obstacle in using softwood in biorefineries is its recalcitrance to enzymatic saccharification. In the present work, Thermothielavioides terrestris LPH172 was cultivated on three different steam-pretreated spruce materials and on non-treated spruce, harboring different hemicellulose co...
ORGANISM(S): Thermothielavioides terrestris 
2024-10-10 | PXD047620 | Pride
Cazy Tmt Spruce Thermothielavioides terrestris Orbitrap fusion lumos 
TranscriptomicsRNA-seq of the thermophilic biomass-degrading fungus Malbranchea cinnamomea FCH 10.5 when grown on glucose, wheat bran and beechwood xylan
The thermophilic fungus Malbranchea cinnamomea belongs to the order of Onygenales and is a promising source of thermostable, industrially relevant biocatalysts, as it can grow at temperatures of more than 50°C and is able to utilise many different types of plant biomass. Enzymes from M. cinnamomea t...
ORGANISM(S): Malbranchea cinnamomea 
2017-10-27 | E-MTAB-6157 | biostudies-arrayexpress
ProteomicsTrichoderma RUT C-30 secretome after growth on different cellulosic substrates
Enzyme production by T. reesei Rut C-30 was studied in submerged cultures on five different cellulose-rich substrates, namely, commercial cellulose Avicel® and industrial-like cellulosic pulp substrates which consist mainly of cellulose, but also contain residual hemicellulose and lignin. In order t...
ORGANISM(S): Trichoderma reesei RUT C-30 
2014-09-11 | PXD001304 | Pride
Cellulose i structure Tandem mass tags Submerged cultivation Quantitative proteomics Biomass degrading enzymes 
TranscriptomicsSaccharomyces cerevisiae stress responses to HMF and furfural (xylose and glucose) Oct
HMF and furfural were pulse added to xylose-utilizing Saccharomyces cerevisiae during either the glucose consumption phase or the xylose consumption phase. Transcriptome samples were collected before and one hour after pulsing of inhibitors. Three biological replicates from each conditions analyzed.
ORGANISM(S): Saccharomyces cerevisiae 
2013-11-25 | E-GEOD-50182 | biostudies-arrayexpress
TranscriptomicsSaccharomyces cerevisiae stress responses to HMF and furfural
The inhibitors hydroxymethylfurfural (HMF) and furfural were added to the feed-medium of carbon-limited anaerobic chemostat cultures. Samples were taken for transcriptome analysis at steady-state from cultures with inhibitors and without inhibitors. Three biological replicates from each condition (i...
ORGANISM(S): Saccharomyces cerevisiae 
2012-10-18 | E-GEOD-41659 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Aspergillus oryzae grown on different carbon sources
In this study, we focused on chemically defined inducers or substrates to drive expression of cellulases, hemicellulases and accessory enzymes in the model filamentous fungus Aspergillus oryzae. Cellohexaose (O-CHE), mannohexaose (O-MHE), xylopentaose (O-XPE), arabinoheptaose (O-AHP), 1,3:1,4-M-NM-2...
ORGANISM(S): Aspergillus oryzae RIB40 
2013-07-15 | E-GEOD-48864 | biostudies-arrayexpress
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