Ong J J - OmicsDI

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Unknown (2027)
Proteomics (45)
Genomics (31)
Transcriptomics (22)
Metabolomics (11)

Organisms

Homo sapiens (65)
Saccharomyces cerevisiae (10)
Mus musculus (8)
Escherichia coli (3)
Drosophila melanogaster (2)
Burkholderia pseudomallei K96243 (1)
Acinetobacter baumannii AB_TG2631 (1)
Betacoronavirus (1)
Bos taurus (1)
Bubalus bubalis (1)
Helicobacter pylori 26695 (1)
Macaca mulatta (1)
Plasmodium falciparum 3D7 (1)
Trichomonas vaginalis (1)

Repository

pride (36)
EGA (27)
biostudies-arrayexpress (26)
MetaboLights (11)
jPOST (4)
MassIVE (3)
iProX (2)

Tissue

Cell culture (8)
Epithelial cell (5)
Blood (2)
Bacterial protein (1)
Blood cell (1)
Blood plasma (1)
Blood platelet (1)
Brain (1)
Embryonic stem cell (1)
Endothelial cell of umbilical vein (1)
Epithelial cell of large intestine (1)
HCT-116 cell (1)
HUVEC cell (1)
Hepatocyte (1)
Liver (1)
Lung (1)
Milk fat (1)
Permanent cell line cell (1)
Pluripotent stem cell (1)
Single nucleate cell (1)
Skeletal muscle fiber (1)

Disease

Breast cancer (2)
Colon cancer (2)
Osteosarcoma (2)
Plasmodium falciparum malaria (2)
Acute leukemia (1)
Brain cancer (1)
Cervix carcinoma (1)
Influenza (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (23)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (4)
Data-dependent acquisition (3)
Gel-based experiment (3)
Top-down proteomics (2)
Affymetrix/Illumina (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry assay (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Illumina HiSeq 2500 (2)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
ShARC (1)
Agilent 2100 (1)
Affymetrix GeneTitan system (1)
Affymetrix GeneChip HT MG-430 PM (1)
Illumina Genome Analyzer IIx (1)
HiSeq X Ten (1)
NextSeq 550 (1)
LTQ Orbitrap (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Tandem Gas Chromatography MS - positive (1)

Publication Date

2023 (12)
2015 (12)
2021 (7)
2025 (7)
2022 (6)
2016 (5)
2013 (5)
2020 (5)
2017 (4)
2014 (4)
2026 (3)
2024 (3)
2010 (2)
2008 (2)
2012 (1)
2011 (1)
2005 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:16359 (4)
CHEBI:28865 (4)
CHEBI:30769 (4)
CHEBI:35038 (4)
CHEBI:15318 (3)
CHEBI:15354 (3)
CHEBI:15428 (3)
CHEBI:16113 (3)
CHEBI:16196 (3)
CHEBI:16235 (3)
CHEBI:16566 (3)
CHEBI:16610 (3)
CHEBI:16704 (3)
CHEBI:16958 (3)
CHEBI:16990 (3)
CHEBI:17154 (3)
CHEBI:17268 (3)
CHEBI:17568 (3)
CHEBI:17821 (3)
CHEBI:17964 (3)
CHEBI:18211 (3)
CHEBI:18257 (3)
CHEBI:27432 (3)
CHEBI:27997 (3)
CHEBI:28790 (3)
CHEBI:30887 (3)
CHEBI:32816 (3)
CHEBI:34494 (3)
CHEBI:46961 (3)
CHEBI:64032 (3)

Metabolite Name

Cholic acid (4)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
14,15-Epoxy-5,8,11-eicosatrienoic acid (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Biliverdin (2)
Dibutyl phthalate (DBP) (2)
Docosahexaenoic acid (2)
Elaidic acid (2)
Glycocholic acid (2)
Guanine (2)
Linoleoyl ethanolamide (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Oleic acid (2)
Spermidine (2)
Taurocholic acid (2)
Taurocholic acid (2)
Trans-EKODE-(E)-Ib (2)
Uracil (2)
(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (7)
ChIP-seq (3)
Unknown experiment type (2)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
Other (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2023 (262)
2022 (244)
2024 (242)
2025 (224)
2021 (223)
2020 (167)
2019 (107)
2018 (104)
2017 (84)
2015 (81)
2016 (68)
2014 (60)
2013 (48)
2026 (37)
2011 (31)
2012 (28)
2010 (17)
2008 (8)
2009 (8)
2007 (5)
2005 (2)
2006 (1)
2003 (1)
1998 (1)

Lab affiliation

University of Washington (8)
EPFL (2)
Angiogenesis & Metabolism Laboratory, Max Planck Institut for Heart and Lung Research, 61231 Bad Nauheim, Germany (1)
Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore (1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (1)
Charles Perkins Centre, University of Sydney, Australia (1)
Chun-Hung Lin's Lab, Institute of Biological Chemistry, Academia Sinica, No. 128 Academic Road Section 2, Nan-Kang, Taipei, 11529, Taiwan (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Department of Biostatistics and Medical Informatics and University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin - Madison, Madison, Wisconsin 53705, United States (1)
Department of Internal Medicine, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA (1)
Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25242 Vestec, Czech Republic (1)
Department of Systems Biology, University of Massachusetts Chan Medical School, investigator of the Howard Hughes Medical Institute. (1)
Department: Department of Microbiology and Immunology Lab: Host and Pathogen Interactivity Lab Institute: National University of Singapore Country: Singapore (1)
Director (1)
Division of Proteomics of Stem Cells and Cancer (1)
European Institute of Oncology IRCCS, 20139 Milan, Italy (1)
Head, Department of Biochemistry and Molecular Biology Head, Signalling Network Laboratory Head, Biomedicine Discovery Institute Cancer Program Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia (1)
Ludwig Institute for Cancer Research, University of California San Diego, CA. Moores Cancer Center, UCSD School of Medicine, La Jolla, CA. Department of Pathology, UCSD School of Medicine, La Jolla, CA (1)
Mass Spectrometry Facility, Max Perutz Labs, University of Vienna, Vienna BioCenter, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (1)
Nanyang Technological Univeristy (1)
Neurosurgeon & Senior Scientist Developmental and Stem Cell Biology, The Hospital for Sick Children, Canada (1)
Professor, Department of Cell and Regenerative Biology Professor, Department of Chemistry Director of Mass Spectrometry Human Proteomics Program School of Medicine and Public Health University of Wisconsin-Madison (1)
Singapore Immunology Network (SIgN), Agency for Science, Technology and Research, Singapore 138648, Singapore (1)
The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
The Hospital for Sick Children (1)
UW Madison (1)
University of Alabama at Birmingham (1)

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Surgical application of Ong speculum in simple limbal epithelial transplantation and pterygium surgery.

Not available

S-EPMC10229916 | biostudies-literature

iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics

Mertins P, Udeshi ND, Clauser KR, Mani DR, Patel J, Ong, SE, Jaffe JD, Carr SA. Mol Cell Proteomics 2012, mcp.M111.014423. doi:10.1074/mcp.M111.014423. Tranche_hash:5cHw5Rj36vYNshNpy8k4nojtPyW27N/FHcImna3+zw4QV6KIlLOg3i6zesWBdWkEX608MEgdxWuVyKvvdOgB9BAanesAAAAAAACEzw==

2013-11-20 | MSV000078495 | MassIVE

Neutralization-sensitive R5-tropic simian-human immunodeficiency virus SHIV-2873Nip, which carries env isolated from an infant with a recent HIV clade C infection.

Not available

S-EPMC2620886 | biostudies-literature

LRRK2 p.G2385R and p.R1628P variants in a multi-ethnic Asian Parkinson's Cohort: epidemiology and clinical insights.

Not available

S-EPMC12627830 | biostudies-literature

Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Natural isolates of Burkholderia pseudomallei (Bp), the causative agent of melioidosis, are known to exhibit diverse phenotypic traits, suggesting significant intraspecies genetic heterogeneity. Using whole-genome Bp microarrays, we experimentally mapped patterns of large-scale genomic variation in ...

ORGANISM(S): Burkholderia pseudomallei K96243

2008-12-25 | E-GEOD-9491 | biostudies-arrayexpress

A Metabolomic Approach for Predicting Diurnal Changes in Cortisol

INTRODUCTION: The dysregulation of cortisol secretion has been associated with a number of mental health and mood disorders. However, diagnostics for mental health and mood disorders are behavioral and lack biological contexts.

OBJECTIVES: The goal of this ...

2021-09-23 | MTBLS1206 | MetaboLights

Comparative Analysis of Host Metabolic Alterations in Murine Malaria Models with Uncomplicated or Severe Malaria

Malaria varies in severity, with complications ranging from uncomplicated to severe malaria. Severe malaria could be attributed to peripheral hyperparasitemia or cerebral malaria. The metabolic interactions between the host and Plasmodium species are yet to be understood during these inf...

2022-09-14 | MTBLS4387 | MetaboLights

Validation of a Consumer Sleep Wearable Device With Actigraphy and Polysomnography in Adolescents Across Sleep Opportunity Manipulations.

Not available

S-EPMC6760396 | biostudies-literature

Combinatorial Hypofractionated Radiotherapy and Pembrolizumab in Anaplastic Thyroid Cancer.

Not available

S-EPMC10895326 | biostudies-literature

Notch and presenilin regulate cellular expansion and cytokine secretion but cannot instruct Th1/Th2 fate acquisition.

Not available

S-EPMC2474705 | biostudies-literature