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TranscriptomicsA genome wide methylation map of neuroblastoma cell lines
This SuperSeries is composed of the following subset Series: GSE31229: Neuroblastoma cell lines treated with DAC (2'-deoxy-5-azacytidine), a DNA-methylation inhibitor GSE31353: Methylation map of 8 neuroblastoma cell lines: NGS after MBD2-capture Refer to individual Series
ORGANISM(S): Homo sapiens 
2012-09-13 | E-GEOD-31355 | biostudies-arrayexpress
GenomicsMethylation map of 8 neuroblastoma cell lines: NGS after MBD2-capture
8 neuroblastoma (NB) cell lines (CLB-GA, IMR-32, SH-SY5Y, N206, CHP-902R, LAN-2, SK-N-AS, SJNB-1) their methylome is determined by sequencing after MBD2-capture using MethylCollector (ActiveMotif) 8 NB cell lines were included (CLB-GA, IMR-32, SH-SY5Y, N206, CHP-902R, LAN-2, SK-N-AS, SJNB-1) in this...
ORGANISM(S): Homo sapiens 
2012-09-13 | E-GEOD-31353 | biostudies-arrayexpress
TranscriptomicsNeuroblastoma cell lines treated with DAC (2'-deoxy-5-azacytidine), a DNA-methylation inhibitor
8 neuroblastoma (NB) cell lines (CLB-GA, IMR-32, SH-SY5Y, N206, CHP-902R, LAN-2, SK-N-AS, SJNB-1) were profiled on the Affymetrix HGU-133plus2,0 platform before and after treatment with DAC (2'-deoxy-5-azacytidine) to investigate the influence on expression after inhibiting DNA-methylation 8 NB cell...
ORGANISM(S): Homo sapiens 
2012-09-13 | E-GEOD-31229 | biostudies-arrayexpress
GenomicsMethyl-CpG-binding domain (MBD) sequencing of 15 primary stage 4S neuroblastoma tumors
The DNA methylome of 15 primary stage 4S neuroblastoma tumors is profiled by enrichment with a methyl-CpG-binding domain (MBD) and massively parallel sequencing DNA of 15 primary stage 4S tumors is sheared (fragments of ± 200 bp), followed by MBD-based (MethylCap kit of Diagenode) enrichement, libr...
ORGANISM(S): Homo sapiens 
2015-12-15 | E-GEOD-69268 | biostudies-arrayexpress
GenomicsMethyl-CpG-binding domain (MBD) sequencing of 45 primary neuroblastoma tumors
The DNA methylome of 45 primary neuroblastoma tumors is profiled by enrichment with a methyl-CpG-binding domain (MBD) and massively parallel sequencing DNA of 45 primary tumors is sheared (fragments of ± 200 bp), followed by MBD-based (MethylCap kit of Diagenode) enrichement, library preparation an...
ORGANISM(S): Homo sapiens 
2015-11-19 | E-GEOD-69243 | biostudies-arrayexpress
UnknownProteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta.
Not available
S-EPMC2788552 | biostudies-literature
UnknownDNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing.
Not available
S-EPMC4736656 | biostudies-literature
UnknownStage 4S neuroblastoma tumors show a characteristic DNA methylation portrait.
Not available
S-EPMC5094630 | biostudies-literature
UnknownDiscovery of DNA methylation markers in cervical cancer using relaxation ranking.
Not available
S-EPMC2605750 | biostudies-literature
GenomicsH3K27ac ChIP-Seq in ALL-SIL
The T-cell leukemia homeobox 1 (TLX1, HOX11) transcription factor is critically involved in the multistep pathogenesis of T-cell acute lymphoblastic leukemia (T-ALL) and often cooperates with NOTCH1 activation during malignant T-cell transformation. However, the exact molecular mechanisms by which t...
ORGANISM(S): Homo sapiens 
2015-08-05 | E-GEOD-70734 | biostudies-arrayexpress
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