Online 2d-lc - OmicsDI

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Proteomics (102)
Unknown (21)
Metabolomics (2)
Other (1)

Organisms

Andropogon gerardi (95)
Bacteria (95)
Canis lupus familiaris (95)
Cnidaria (95)
Cricetulus griseus (95)
Eukaryota (95)
Fasciola (95)
Hepatitis B virus (95)
Human betaherpesvirus 5 (95)
Madurella mycetomatis (95)
Mesocricetus auratus (95)
Miscanthus x giganteus (95)
Mus musculus (95)
Mycobacterium tuberculosis (95)
Orthoflavivirus (95)
Panicum virgatum (95)
Platyhelminthes (95)
Pseudomonas aeruginosa AES-1R (95)
Rattus norvegicus (95)
Rattus rattus (95)
Rhodococcus jostii RHA1 (95)
Saccharomyces cerevisiae (95)
Severe acute respiratory syndrome coronavirus 2 (95)
Sorghastrum nutans (95)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (95)
Streptococcus pneumoniae (95)
Streptomyces coelicolor A3(2) (95)
Toxoplasma gondii (95)
Tripsacum dactyloides (95)
Viruses (95)

Repository

pride (95)
MassIVE (7)
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GPMDB (1)

Tissue

Cell culture (13)
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T cell (1)

Disease

Disease free (3)
Malaria (3)
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Human immunodeficiency virus infectious disease (2)
Not Available (1)
Autoimmune disease of eyes (1)
Colon cancer (1)
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Plasmodium falciparum malaria (1)
Renal cell carcinoma (1)
Rhabdomyosarcoma (1)
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Thyroid cancer (1)
Trypanosomiasis (1)
Uveitis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (95)
Shotgun proteomics (68)
Gel-based experiment (11)
Bottom-up proteomics (8)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (3)
MSE (2)
SRM/MRM (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Mass spectrometry (1)
All-ion fragmentation (1)
HDMSE (1)
Immunopeptidomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Orbitrap Exploris 480 (2)
Instrument (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
6545 Q-TOF LC/MS (1)
LTQ FT (1)
MaXis (1)
Orbitrap Ascend (1)
Q Exactive (1)
Q Exactive HF-X (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2018 (17)
2025 (12)
2022 (12)
2021 (11)
2019 (10)
2024 (8)
2017 (7)
2026 (6)
2016 (5)
2023 (5)
2020 (4)
2015 (4)
2014 (3)

CHEBI ID

CHEBI:17521 (1)
CHEBI:36281 (1)
CHEBI:16112 (1)

Metabolite Name

ZV4 (1)
Xamoterol [USAN:BAN:INN] (1)
PUROMYCIN (1)
NPYR (1)
N-Phenylacetylglutamic acid*;*tyr-thr (1)
Nitroscanate (1)
N-Acetyl-L-Citrulline (1)
N-[2-(4-{[5-(Aminomethyl)-3-furyl]methoxy}phenyl)ethyl]glutamine (1)
N,N-Dimethyl-N-phenylurea (1)
M3C/m5C (1)
M1A (1-Methyladenosine) (1)
Lorbamate (1)
Leu-Gly-Gly*,*Leucylasparagine (1)
Hypoxanthin (1)
Hydroxytryptophol (1)
H-Met(O)-OH (1)
Heptopyranosides (1)
Gamma-Glutamyl-gamma-glutamyl-N-carboxy-beta-alanine (1)
Gamma-Aminobutyric acid*,*3-Aminobutanoic acid (BABA)*,*D,L-alpha-Aminoisobutyric acid*,*DL-2-Aminobutyric acid (1)
Ethyl {2-[(2E)-5-(hexopyranosyloxy)-2-penten-1-yl]-3-oxocyclopentyl}acetate (1)
Cytidine 5′-monophosphate (1)
Corraton (1)
Citronellyl Acetate (1)
Beta-Syringin (1)
Beta-Alanine*,*Sarcosine (1)
Azatyrosine (1)
Artemether*;*butoctamide (1)
ARG-PHE (1)
Anthramycin (1)
Ambrette musk (1)

Modification

Not available (1)

Release Date

2022 (4)
2025 (2)
2021 (2)
2020 (2)
2018 (2)
2012 (2)
2024 (1)
2023 (1)
2017 (1)
2016 (1)
2014 (1)
2013 (1)
2009 (1)

Lab affiliation

Graduate Institute of Natural Products, Chang Gung University, Taoyuan, Taiwan (3)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (3)
Department of Biochemistry and Biomedical Sciences McMaster University (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (2)
Department of Genetics, Stanford University (2)
Department of Translational Research in Psychiatry Max Planck Institute of Psychiatry, Munich (2)
Emerging Pathogens Institute, University of Florida (2)
W. Harry Feinstone Department of Molecular Microbiology & Immunology and the Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health (2)
1) CNRS - ITAV USR3505, 31106 Toulouse, France 2) Nova Medical School, CEDOC- Chronic Diseases, 1150-082, Lisboa, Portugal (1)
1. Laboratorio de Enfermedades Parasitarias, Facultad de Ciencias Veterinarias, Universidad del Zulia, Maracaibo, Venezuela 2. Department of Biomedical Sciences, School of Medicine, University of Minnesota Duluth. 1035 University Drive, Duluth, MN, 55812 USA (1)
Associate Professor Department of Microbiology and Immunology The G.W. Hooper Research Foundation The University of California, at San Francisco 513 Parnassus Ave, HSW 1532, Box 0552 San Francisco, CA 94143 (1)
Biomolecular Mass Spectrometry and Proteomics groups, Utrecht University (1)
Center for Neuroscience and Cell Biology (1)
Chang Gung Memorial Hospital (1)
Cirad Bios UMR Intertryp, Campus international de Baillarguet TA A 17/G F-34398 Montpellier Cedex 5 France (1)
College of Agronomy, Henan Agricultural University/Collaborative Innovation Center of Henan Grain Crops, Zhengzhou 450002, China (1)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
Departamento de interacción epidemiológica, Instituto Nacional de Salud Pública. Universidad No. 655, Col. Santa María Ahuacatitlán, Cuernavaca, Morelos. CP 62100. México. (1)
Department of Biochemistry and Molecular Biology, College of Medicine, Chang Gung University, No.259, Wenhua 1st Rd., Guishan Dist., Taoyuan City 33302, Taiwan (R.O.C.) (1)
Department of Biomedical Sciences, College of Medicine, Chang Gung University, Tao-Yuan Taiwan (1)
Department of Biomedicine, Aarhus University, Arhus, Denmark (1)
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany (1)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Chemistry, Korea University, Seoul 02841, Republic of Korea (1)
Department of Chemistry, Michigan State University (1)
Department of Chemistry, UC Riverside (1)
Department of Infectious Diseases and Immunology, Emerging Pathogens Institute, University of Florida, United States of America (1)
Department of Korea University, Chemistry (1)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Microbiology, The Ohio State University, Columbus OH (1)

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Displacement Chromatography Mode – High protein sequence coverages and identification rates for low µg-range proteomics using online 2D-LC-MS

In bottom-up proteomics, the complexity of proteomes is still a challenge. For deep proteome profiling, multi-dimensional separation strategies and large initial protein amounts are required. Here, we report on an online 2D-LC-MS/MS approach applying strong cation exchange chromatography (SCX) in di...

ORGANISM(S): Homo sapiens (Human)

2018-10-17 | PXD008562 | Pride

Online 2D-LC-MS/MS Platform for Analysis of Glycated Proteome.

Not available

S-EPMC5951789 | biostudies-literature

Online-2D nanoLC-MS for crude serum proteome profiling: assessing sample preparation impact on proteome composition

Although current LC-MS technology permits scientists to efficiently screen clinical samples in translational research, e.g. steroids, biogenic amines and even plasma or serum proteomes, in a daily routine, maintaining the balance between throughput and analytical depth is still a limiting factor. A ...

ORGANISM(S): Homo sapiens (Human)

2021-07-09 | PXD024893 | Pride

Peptide fractionation Blood Nanolc-ms 1d nanolc-ms Proteome profiling Crude serum High-resolution accurate mass-spectrometry Online-2d nanolc-ms

Profiling of fasting-feeding dynamics in mouse liver

Daily biological rhythms are orchestrated by a combination of the intrinsic circadian clock and external food/feeding-related signals which influence metabolism in health and disease. Understanding how and to which extent both circadian and fasting/feeding rhythms contribute to regulating daily phys...

ORGANISM(S): Mus musculus (Mouse)

2021-01-22 | PXD008944 | Pride

Metabolism Mouse Fasting Liver 1d-lc-msms Online 2d-lc-msms Feeding

Development of an Online 2D Ultrahigh-Pressure Nano-LC System for High-pH and Low-pH Reversed Phase Separation in Top-Down Proteomics.

Not available

S-EPMC7544661 | biostudies-literature

Automated clean-up, separation and detection of polycyclic aromatic hydrocarbons in particulate matter extracts using a 2D-LC/2D-GC system: a method translation from two FIDs to two MS detectors.

Not available

S-EPMC5583270 | biostudies-literature

Extending proteome coverage through an on-line 2D SCX-RP ultra-high pressure system

Ultra high pressure liquid chromatography (UHPLC) systems combined with state of the art mass spectrometers have pushed the limit of deep proteome sequencing to new heights making it possible to identify thousands of proteins in a single LC/MS experiment within a few hours. However, the relationship...

ORGANISM(S): Homo sapiens (Human)

2014-09-30 | PXD000705 | Pride

2d lc-ms/ms Proteomics

A Comprehensive 2D-LC/MS Online Platform for Screening of Acetylcholinesterase Inhibitors.

Not available

S-EPMC8967351 | biostudies-literature

Extending proteome coverage through an on-line 2D SCX-RP ultra-high pressure system

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-31 | MSV000080845 | MassIVE

Native Top-Down Proteomics of Endogenous Protein Complexes Enabled by Online Two-Dimensional Liquid Chromatography

Development of online 2D-LC for native top-down proteomics. Application to human heart tissue.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2025-02-23 | MSV000097200 | MassIVE

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