Opportunistic pathogen

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Unknown (5017)
Genomics (1761)
Transcriptomics (357)
Proteomics (157)
Other (14)
Metabolomics (11)
Models (7)

Organisms

Pseudomonas aeruginosa (68)
Candida albicans (50)
Pseudomonas aeruginosa PAO1 (35)
Mus musculus (31)
Homo sapiens (28)
Staphylococcus aureus (17)
Aspergillus fumigatus (11)
Cryptococcus neoformans (11)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (6)
Streptococcus agalactiae (5)
Burkholderia cenocepacia (5)
Burkholderia cenocepacia H111 (5)
Aspergillus flavus (5)
Zea mays (5)
Talaromyces marneffei (4)
Haemophilus influenzae (4)
Stenotrophomonas maltophilia (4)
Mytilus edulis (2)
Haemophilus influenzae 86-028NP (2)
Staphylococcus aureus subsp. aureus N315 (2)
Proteus mirabilis (2)
Enterococcus faecalis V583 (2)
Vibrio vulnificus (1)
Bacillus anthracis str. Ames (1)
Bacteroides fragilis 638R (1)
Cryptosporidium parvum (1)
Clostridium perfringens str. 13 (1)
Bacillus cereus ATCC 14579 (1)
Mucor lanceolatus (1)
Dictyostelium discoideum (1)

Organisms

Pseudomonas aeruginosa (74)
Candida albicans (41)
Pseudomonas aeruginosa PAO1 (25)
Mus musculus (24)
Klebsiella pneumoniae (22)
Staphylococcus aureus (22)
Serratia marcescens (21)
Escherichia coli (20)
Acinetobacter baumannii (20)
Shigella boydii (18)
Homo sapiens (18)
Vibrio alginolyticus (17)
Cryptococcus neoformans (14)
Shigella dysenteriae (13)
Aspergillus fumigatus (11)
Enterococcus faecium (11)
Stenotrophomonas maltophilia (10)
Haemophilus influenzae (9)
Chromobacterium haemolyticum (9)
Elizabethkingia meningoseptica (8)
Pseudomonas aeruginosa UCBPP-PA14 (8)
Klebsiella pneumoniae subsp. pneumoniae (7)
Staphylococcus epidermidis (7)
Burkholderia gladioli pv. cocovenerans (6)
Clostridium sporogenes (6)
Trueperella pyogenes (6)
Mycobacteroides abscessus (6)
Nakaseomyces glabratus (6)
Morganella morganii (6)
Talaromyces marneffei (5)

Repository

ENA (1748)
geo (255)
pride (133)
biostudies-arrayexpress (129)
iProX (11)
MetaboLights (11)
MassIVE (9)
BioModels (7)
PanoramaPublic (4)
GPMDB (1)

Tissue

Cell culture (25)
Feces (6)
Epithelial cell (6)
Colon (4)
Lung (2)
Bone marrow macrophage (1)
Hyphal cell (1)
Oral mucosa (1)
Hemolymph (1)
Fungus (1)
Shoot (1)
Plant cell (1)
Bone marrow (1)
Brain (1)
Cell suspension culture (1)
Root (1)
Whole body (1)
Spleen (1)
Fibroblast (1)
Permanent cell line cell (1)
Neutrophil (1)
Monocyte (1)

Disease

Opportunistic bacterial infectious disease (6)
Colon cancer (4)
Cystic fibrosis (3)
Cryptococcal meningitis (2)
Bacterial infectious disease (2)
FRD1234 (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
P. aeruginosa infected (1)
Not Available (1)
Bladder disease (1)
Dental caries (1)
Candidiasis (1)
Cryptococcosis (1)
Toxoplasmosis (1)
Crohn's disease (1)
Disease free (1)

Technology Type

Mass Spectrometry (133)
Shotgun proteomics (80)
Bottom-up proteomics (35)
Data-dependent acquisition (15)
Data-independent acquisition (11)
Gel-based experiment (9)
Mass spectrometry (8)
SWATH MS (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry assay (3)
Affinity proteomics (2)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Q Exactive (3)
Genewiz library construction hardware (2)
Centrifuge, RNeasy Kit (Qiagen) (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Velos (2)
Q Exactive Plus (2)
Scalpel, dry ice (1)
Scalpel, dry ice. (1)
ATR03 reader (1)
GenePix 4200AL (1)
Fluidic Station 450 (1)
HiSeq X Five (1)
GCS3000 (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
Bioanalyser (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
AB SCIEX Triple TOF 5600 (1)
Orbitrap Q Exactive HF-X (1)
MaXis (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)

Publication Date

2026 (47)
2022 (44)
2024 (39)
2023 (38)
2025 (38)
2021 (37)
2015 (35)
2010 (33)
2020 (31)
2013 (29)
2016 (28)
2019 (26)
2012 (25)
2014 (24)
2018 (23)
2011 (16)
2017 (14)
2008 (9)
2009 (7)
2007 (4)
2006 (3)
2005 (2)

CHEBI ID

CHEBI:15971 (4)
CHEBI:16015 (4)
CHEBI:17895 (4)
CHEBI:39246 (3)
CHEBI:16562 (3)
CHEBI:30805 (3)
CHEBI:30832 (3)
CHEBI:28875 (3)
CHEBI:28842 (3)
CHEBI:6650 (3)
CHEBI:30763 (3)
CHEBI:35581 (3)
CHEBI:16467 (3)
CHEBI:17203 (3)
CHEBI:16414 (3)
CHEBI:17295 (3)
CHEBI:28865 (3)
CHEBI:28716 (3)
CHEBI:17368 (3)
CHEBI:3219 (2)
CHEBI:28866 (2)
CHEBI:28941 (2)
CHEBI:41774 (2)
CHEBI:8234 (2)
CHEBI:82334 (2)
CHEBI:28864 (2)
CHEBI:5856 (2)
CHEBI:29013 (2)
CHEBI:2569 (2)
CHEBI:119573 (2)

Metabolite Name

Adipic acid (4)
Tamoxifen (3)
Heptanoic acid (3)
Pyroglutamic acid (3)
L-Lysine (3)
L-Aspartic acid (3)
Epsilon-caprolactam (3)
L-Proline (3)
Stearic acid (3)
Itaconic acid (3)
Adenosine (3)
Aminoadipic acid (3)
Suberic acid (3)
N-acetyltryptophan (3)
Dodecanoic acid (3)
Myristic acid (3)
L-Serine (3)
L-Tyrosine (3)
L-Phenylalanine (3)
Methyclothiazide (2)
Butoconazole (2)
Indole (2)
5-Phenyl-1,3-pentadiyne (2)
4-Methylumbelliferone sulfate (2)
Selenomethionine (2)
Acetyl adenylate (2)
Selenohomocysteine (2)
Thiamine monophosphate (2)
6-Mercaptopurine ribonucleoside triphosphate (2)
Tetracosanoic acid (2)

First Public Date

2014 (446)
2013 (229)
2026 (173)
2025 (153)
2024 (141)
2023 (85)
2019 (85)
2022 (83)
2021 (82)
2020 (81)
2018 (55)
2015 (48)
2016 (44)
2017 (39)
2012 (2)
2011 (1)
2010 (1)

Modelling Approach

Constraint-based model (7)

Lab affiliation

Department of Chemical & Systems Biology, Stanford University (6)
Head of the Curie Institute Mass Spectrometry Platform (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (3)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences (2)
Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada (2)
Medical Mycology Laboratory, Department of Biology, Maynooth University (2)
Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (2)
MRC Centre for Medical Mycology University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter EX4 4QD, UK (2)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (2)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (2)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
EDyP (2)
College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, China (2)
Department of Chemistry and Biomolecular Sciences Faculty of Science and Engineering Macquarie University Sydney, New South Wales, Australia (1)
CNRS, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, France. Université de Strasbourg, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, France. (1)
1. Department of Paediatrics, University Hospital of North Norway, Tromsø, Norway 2 Paediatric Research Group, Department of Clinical Medicine, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway. (1)
Medimmune LLC (1)
University of Greifswald, Institue for Microbiology (1)
State Key laboratory of Agricultural Microbiology, College of Veterinary Medcine, Huazhong Agricultural University, Wuhan, Hubei, PR China (1)
Department of Biology, Maynooth University, Co. Kildare, Ireland. (1)
Assistant Professor, Faculty of Dentistry, National University of Singapore (1)
Institute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India. (1)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (1)
Siobhán McClean, PhD, PDip Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Associate Professor in Proteomics, Head of Proteomics, Centre for Proteomic Research, University of Southampton, UK (1)
NextGen Health CSIR South Africa (1)
Medical Mycology Lab Biology Department Maynooth University Ireland (1)
Department of Molecular Microbiology, B. Rappaport Faculty of Medicine, Technion – I.I.T. and the Rappaport Institute for Research in the Medical Sciences, Haifa 31096, Israel (1)
Institute for Microbiology, Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (1)

IsPrivate

False (7)

Model Flag

Non Kinetic (3)

Submitter Keywords

FROG (3)

Classification

bacteria (772)
fungi (112)
protozoa (10)
viruses (2)

Modification

6x(2)H labeled dimethylated L-arginine (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

Transcription profiling by array (94)
RNA-seq of coding RNA (18)
Comparative genomic hybridization by array (4)
Unknown experiment type (3)
DNA-seq (2)
RNA-seq of total RNA (2)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (516)
2025 (498)
2023 (476)
2021 (421)
2024 (413)
2020 (409)
2019 (330)
2018 (325)
2016 (260)
2017 (241)
2015 (230)
2014 (175)
2013 (152)
2012 (118)
2011 (100)
2010 (92)
2009 (70)
2026 (64)
2008 (57)
2007 (44)
2006 (40)
2005 (24)
2004 (23)
2003 (16)
2002 (16)
2001 (11)
2000 (11)
1998 (7)
1999 (6)
1997 (1)

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A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection

The potential for commensal microorganisms indigenous to a host (the microbiome or microbiota) to alter infection outcome by influencing host-pathogen interplay is largely unknown. We used a multi-omics systems approach, incorporating proteomics, metabolomics, glycomics, and metagenomics, to explore...

2014-06-24 | MTBLS96 | MetaboLights

Functional characterization of the RNA chaperone Hfq in opportunistic human pathogen Stenotrophomonas maltophilia

Stenotrophomonas maltophilia is an important opportunistic pathogen affecting primarily hospitalized and immuno-compromised hosts. We constructed an hfq deletion mutant (Delta-hfq) of S. maltophilia, and compared the behaviour of wild-type and Delta-hfq S. maltophilia cells in a variety of assays. D...

ORGANISM(S): Stenotrophomonas maltophilia

2012-10-02 | E-GEOD-39705 | biostudies-arrayexpress

A lipase gene family promotes gut commensalism of an opportunistic fungal pathogen

PRJEB75939 | ENA

Virulence evolution in the opportunistic bacterial pathogen Pseudomonas aeruginosa

PRJEB23190 | ENA

Proteogenomics of Candida tropicalis – an opportunistic pathogen

Candida tropicalis is an opportunistic pathogen which causes candidiasis in immune-compromised individuals. It is one of the members of the non-albicans group of Candida that are known to be azole resistant and is frequently seen in individuals being treated for cancers, HIV-infection and bone-marr...

ORGANISM(S): Candida tropicalis (Yeast)

2017-05-08 | PXD001071 | Pride

Genome annotation Shotgun proteomics

Global proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen

Elizabethkingia meningoseptica previously known as Chryseobacteriummeningosepticum is a gram-negative bacillus, commonly encountered in hospital environment. The pathogen is highly prevalent in hospital acquired neonatal meningitis. We performed unbiased global proteomic profiling and Proteogenomics...

ORGANISM(S): Elizabethkingia meningoseptica

2020-02-17 | PXD007661 | Pride

Virulence Elizabethkingia meningoseptica Nosocomial pathogen Proteogenomics

tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa

PRJEB69610 | ENA

Oberhardt2008 - Genome-scale metabolic network of Pseudomonas aeruginosa (iMO1056)

Oberhardt2008 - Genome-scale metabolic network of Pseudomonas aeruginosa (iMO1056) This model is described in the article: Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1. Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santo...

2015-07-30 | MODEL1507180020 | BioModels

Opportunistic pathogen

PRJNA1464068 | ENA

Cronobacter turicensis

Opportunistic pathogen

PRJNA39989 | ENA

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7325 Results

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