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MetabolomicsMicrobial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans
Plant fibers in byproduct streams produced by non-harsh food processing methods represent biorepositories of diverse, naturally occurring, and physiologically active biomolecules. To demonstrate one approach for their characterization, mass spectrometry of intestinal contents from gnotobiotic mice, ...
2022-07-28 | MTBLS2331 | MetaboLights
TranscriptomicsGenome-wide profiling of microRNAs in sweet orange
miRNAs-mediated gene silencing pathway plays vital roles in plant development, abiotic and biotic stress responses. Here, we carried out a high-throughput sequencing approach to identify miRNAs in leaves and flowers of sweet orange. Consequently we identified genome-wide 183 known miRNAs and 38 nove...
ORGANISM(S): Citrus sinensis 
2014-10-21 | E-GEOD-46747 | biostudies-arrayexpress
TranscriptomicsGenome-wide profiling of microRNAs target transcripts in sweet orange
miRNAs-mediated gene silencing pathway plays vital roles in plant development, abiotic and biotic stress responses. Here, we carried out a high-throughput sequencing approach to identify miRNAs targets in leaves, flowers and fruit of sweet orange.C onsequently, 55257, 62365 and 19393 degraded mRNA f...
ORGANISM(S): Citrus sinensis 
2014-10-21 | E-GEOD-46764 | biostudies-arrayexpress
MetabolomicsUntargeted metabolomics of purple and orange-fleshed sweet potatoes reveals a large structural diversity of anthocyanins and flavonoids

Anthocyanins are economically valuable phytochemicals of significant relevance to human health. Industrially extracted from multiple fruit and vegetable sources, anthocyanin yield and profiles can vary between sources and growing conditions. In this study, we focused on three purple-fleshed and o...

2021-09-01 | MTBLS2956 | MetaboLights
TranscriptomicsTranscriptome dynamics during fruit development of sweet orange (Citrus sinensis)
• To dissect how the genes are dynamically and differentially expressed during fruit development in sweet orange, a comprehensive transcriptomic study was performed in a pleiotropic mutant (MT) and its wild type (WT). • The detection of the fruit transcriptomic changes was conducted at five stages ...
ORGANISM(S): Citrus sinensis 
2012-06-22 | E-GEOD-22505 | biostudies-arrayexpress
TranscriptomicsResponse of Sweet Orange (Citrus sinensis) to Candidatus Liberibacter asiaticus Infection
Citrus greening or huanglongbing (HLB) is a devastating disease of citrus. HLB is associated with the phloem-limited fastidious prokaryotic alpha-proteobacterium Candidatus Liberibacter spp. In this report, we used sweet orange (Citrus sinensis) leaf tissue infected with 'Ca. Liberibacter asiaticus'...
ORGANISM(S): Citrus sinensis 
2013-10-01 | E-GEOD-33003 | biostudies-arrayexpress
TranscriptomicsTranscriptional analysis of the sweet orange interaction with the citrus canker pathogens
We have used the citrus GeneChip array (GPL5731) to survey the transcription profiles of sweet orange in response to the bacterial pathogens Xanthomonas axonopodis pv. citri (Xac) and Xanthomonas axonopodis pv. aurantifolii (Xaa). Xac is the causal agent of the citrus canker disease on a wide range ...
ORGANISM(S): Citrus sinensis 
2010-05-25 | E-GEOD-10798 | biostudies-arrayexpress
TranscriptomicsDeep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
MicroRNAs (miRNAs) play a critical role in post-transcriptional gene regulation. miRNAs have been shown to control many genes involved in various biological and metabolic processes. Deep sequencing technologies have facilitated identification of species-specific or lowly expressed as well as conser...
ORGANISM(S): Citrus trifoliata 
2010-08-17 | E-GEOD-22089 | biostudies-arrayexpress
TranscriptomicsGenome-wide profiling of microRNAs and their targets in sweet orange
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Citrus sinensis 
2014-10-21 | E-GEOD-46765 | biostudies-arrayexpress
TranscriptomicsA genomic approach to bud mutation in sweet orange (Citrus sinensis L. Osbeck) fruit
Bud mutations arise often in citrus. The selection of mutants is one of the most important breeding methods in citrus. However, the molecular bases of bud mutation have rarely been studied. To identify the potential important or novel genes involved in bud mutation, different transcriptomic techniqu...
ORGANISM(S): Citrus sinensis 
2009-03-09 | E-GEOD-10729 | biostudies-arrayexpress
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