Orf - OmicsDI

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Unknown (3731)
Transcriptomics (1513)
Genomics (1085)
Proteomics (274)
Multiomics (51)
Other (31)
Metabolomics (13)
Models (1)

Organisms

Homo sapiens (626)
Mus musculus (417)
Saccharomyces cerevisiae (220)
Caenorhabditis elegans (186)
Drosophila melanogaster (140)
Schizosaccharomyces pombe (40)
Arabidopsis thaliana (25)
Escherichia coli (23)
Candida albicans (18)
Danio rerio (15)
Rattus norvegicus (14)
Tetrahymena thermophila (13)
Escherichia coli str. K-12 substr. MG1655 (12)
Salmonella enterica subsp. enterica serovar Typhimurium (10)
Trypanosoma brucei (7)
Plasmodium falciparum (7)
Staphylococcus aureus (7)
Zea mays (6)
Oryza sativa Japonica Group (6)
Bacillus subtilis (6)
Yersinia pestis (5)
Streptococcus pneumoniae (5)
Salmonella enterica (5)
Penicillium chrysogenum (4)
Photobacterium profundum (4)
Bombyx mori (4)
Corynebacterium glutamicum (4)
Chlorocebus sabaeus (4)
Mycobacterium tuberculosis (4)
Pseudomonas putida (4)

Organisms

Homo sapiens (103)
Saccharomyces cerevisiae (67)
Mus musculus (29)
Schizosaccharomyces pombe (13)
Orf virus (10)
Candida albicans (8)
Escherichia coli (7)
Drosophila melanogaster (5)
Staphylococcus aureus (5)
Arabidopsis thaliana (5)
Streptococcus pyogenes (5)
Escherichia coli str. K-12 substr. MG1655 (4)
Capra hircus (4)
Rattus norvegicus (4)
Turbot circovirus (3)
Moraxella catarrhalis (3)
Aspergillus fumigatus (3)
Nakaseomyces glabratus (3)
Enterobacter hormaechei (3)
Ovis aries (3)
synthetic construct (3)
Taenia crassiceps (2)
Hepatitis delta virus (2)
Methanocaldococcus jannaschii (2)
Ogataea angusta (2)
Cryptococcus neoformans (2)
Brucella melitensis (2)
Vibrio cholerae (2)
Acinetobacter baumannii (2)
Danio rerio (2)

Repository

biostudies-arrayexpress (1865)
ENA (548)
geo (199)
pride (141)
PeptideAtlas (48)
EGA (34)
MassIVE (32)
iProX (17)
jPOST (14)
MetaboLights (10)
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PAXDB (3)
GNPS (2)
BioModels (1)
MetabolomicsWorkbench (1)
NODE (1)

Tissue

Cell culture (45)
Others (20)
Epithelial cell (8)
Female Reproductive System (5)
Liver (5)
Heart (4)
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Colon (4)
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Blood (2)
Conidium (2)
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Hypha (2)
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Primary cell (2)
Testis (2)
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Heart (1)
Adrenal Gland (1)
Digestive System (1)

Disease

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Disease free (2)
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Colorectal cancer (1)
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Normal (1)
Cancer (1)
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Carcinoma (1)
Healthy donor tissue (1)
Dementia (1)
COVID-19 (1)
Childhood medulloblastoma (1)
Cytomegalovirus retinitis (1)
Endometrial cancer (1)
Epstein-Barr virus hepatitis (1)
Giardiasis (1)
Head and neck cancer (1)

Technology Type

Mass Spectrometry (142)
Shotgun proteomics (86)
Affinity purification coupled with mass spectrometry proteomics (28)
Bottom-up proteomics (23)
Illumina HiSeq 2000 (16)
Data-dependent acquisition (11)
Gel-based experiment (11)
Mass spectrometry (9)
Top-down proteomics (9)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (6)
SRM/MRM (5)
SWATH MS (4)
Illumina HiSeq 2000, Illumina Genome Analyzer II (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Illumina HiSeq 2000, ILLUMINA (1)
Mass spectrometry assay (1)
ESI (1)
DiaPASEF (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)

Instrument Platform

NextSeq 500 (57)
Illumina HiSeq 2000 (51)
Illumina NovaSeq 6000 (45)
Illumina HiSeq 2500 (37)
Illumina MiSeq (20)
Illumina HiSeq 4000 (16)
NextSeq 2000 (14)
Illumina Genome Analyzer II (11)
NextSeq 550 (11)
Axon GenePix 4000B scanning hardware (9)
Illumina NovaSeq X (6)
Illumina Genome Analyzer IIx (5)
GenePix 4000B [Axon Instruments] (5)
Element AVITI (4)
PromethION (3)
Agilent G2565BA (3)
Illumina HiSeq 3000 (3)
IEO HPC (2)
Axon GenePix4000B (2)
GenePix 4000A [Axon Instruments] (2)
Spectronic Helios Alpha UV-Vis spectrophotometer (2)
418 [Affymetrix] (2)
HiSeq X Ten (2)
Using NEBNext Ultra II DNA Library (1)
KAPA RNA HyperPrep Kit (1)
Omni ATAC kit (1)
Linux server, HPC cluster (1)
Not applicable in this study (1)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (1)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (1)

Publication Date

2013 (318)
2010 (261)
2014 (246)
2015 (215)
2012 (200)
2016 (153)
2011 (135)
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2023 (68)
2021 (66)
2026 (65)
2008 (61)
2009 (60)
2020 (59)
2024 (49)
2006 (46)
2022 (45)
2017 (43)
2018 (42)
2019 (40)
2007 (35)
2005 (34)
2004 (5)
2003 (4)

UNIPROT ID/AC

10090.ENSMUSP00000021045 (1)
10090.ENSMUSP00000021384 (1)
10090.ENSMUSP00000032399 (1)
10090.ENSMUSP00000034483 (1)
10090.ENSMUSP00000040384 (1)
10090.ENSMUSP00000047171 (1)
10090.ENSMUSP00000048857 (1)
10090.ENSMUSP00000050156 (1)
10090.ENSMUSP00000053997 (1)
10090.ENSMUSP00000057224 (1)
10090.ENSMUSP00000058563 (1)
10090.ENSMUSP00000061247 (1)
10090.ENSMUSP00000062493 (1)
10090.ENSMUSP00000065295 (1)
10090.ENSMUSP00000065508 (1)
10090.ENSMUSP00000066020 (1)
10090.ENSMUSP00000066598 (1)
10090.ENSMUSP00000071284 (1)
10090.ENSMUSP00000071496 (1)
10090.ENSMUSP00000071658 (1)
10090.ENSMUSP00000071763 (1)
10090.ENSMUSP00000072521 (1)
10090.ENSMUSP00000072775 (1)
10090.ENSMUSP00000076447 (1)
10090.ENSMUSP00000078222 (1)
10090.ENSMUSP00000078229 (1)
10090.ENSMUSP00000078239 (1)
10090.ENSMUSP00000078339 (1)
10090.ENSMUSP00000078625 (1)
10090.ENSMUSP00000078670 (1)

ENSEMBL ID

ENSG00000170477 (47)
ENSG00000229353 (31)
ENSG00000147251 (16)
ENSG00000247315 (12)
ENSG00000204131 (8)
ENSG00000214897 (3)
ENSG00000176092 (2)

CHEBI ID

CHEBI:15741 (6)
CHEBI:17992 (5)
CHEBI:32816 (5)
CHEBI:33508 (4)
CHEBI:15428 (4)
CHEBI:15963 (4)
CHEBI:6650 (4)
CHEBI:17568 (4)
CHEBI:15940 (4)
CHEBI:16449 (4)
CHEBI:18012 (4)
CHEBI:16027 (4)
CHEBI:30915 (4)
CHEBI:30769 (4)
CHEBI:22605 (3)
CHEBI:24266 (3)
CHEBI:17521 (3)
CHEBI:15584 (3)
CHEBI:30816 (3)
CHEBI:26984 (3)
CHEBI:17553 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:15978 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:22653 (3)
CHEBI:18186 (3)
CHEBI:28757 (3)

Metabolite Name

Glyceric acid (5)
Arabitol (4)
Pyruvic acid (4)
Lactic acid (4)
Nicotinic acid (4)
Succinic acid (4)
Malic acid (4)
Fructose (4)
Alanine (4)
Glucose (4)
Ribitol (3)
Phosphoric acid (3)
Leucine (3)
Threonic acid (3)
Vanillic acid (3)
Glycine (3)
Glycerol (3)
Phosphoenolpyruvic acid (3)
Glycolic acid (3)
Uracil (3)
Valine (3)
Mannitol (3)
Gluconic acid (3)
Putrescine (3)
Pantothenic acid (3)
Fumaric acid (3)
Citric acid (3)
Itaconic acid (3)
Lysine (3)
Asparagine (3)

First Public Date

2014 (136)
2024 (56)
2026 (50)
2025 (44)
2023 (41)
2020 (39)
2021 (34)
2019 (28)
2013 (28)
2022 (24)
2018 (21)
2017 (21)
2016 (17)
2015 (9)

Modelling Approach

Machine learning (1)

Lab affiliation

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan. (4)
School of Agriculture, Meiji University (4)
School of Biosciences, University of Sheffield, Sheffield, UK (3)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (2)
Cambridge Institute for Medical Research, University of Cambridge (2)
Chemistry (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Institute of Virology, Technical University of Munich, Munich, Germany. (2)
Li2D (2)
School of Agriculture, Meiji University, Japan (2)
VIB Midical Biotechnology Center, University of Gent, Belgium (2)
"Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris Diderot University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE tel : 33(1)57278029 (1)
1Department of Pharmacology,Feinberg School of Medicine,Northwestern University, Chicago 2Department of Biomedical Engineering, McCormick School of Engineering, Northwestern University,Northwestern University, Evanston (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
AQUACEN - National Reference Laboratory for Aquatic Animal Diseases (1)
Berlin Institute for Medical System Biology @ Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association Hannoversche Str. 28, 10115 Berlin Germanyt (1)
Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Bioprocessing Technology Institute , Agency for Science, Technology and Research-A*STAR, 20 Biopolis Way 06-01, Singapore 138668, Republic of Singapore (1)
CSIRO Agriculture and Food, 306 Carmody Rd, St Lucia QLD 4067, Australia (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Cell Biology, Harvard Medical School, USA (1)
Center for Molecular Biology of Heidelberg University (ZMBH), 69120 Heidelberg, Germany (1)
Center for RNA Biology: From Genome to Therapeutics Department of Biochemistry and Biophysics University of Rochester Medical Center Rochester, NY, 14642, USA (1)
Centre for Organismal Studies Dep. Molecular Evolution and Genomics University of Heidelberg 69120 Heidelberg Germany (1)
Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Departamento de Biología Molecular, Instituto Universitario de Biología Molecular (IUBM), Universidad Autónoma de Madrid (1)
Chair, Department of Environmental and Global Health, College of Public Health and Health Professions, University of Florida (1)
Childrens Hospital of Pennsylvania (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. (1)

IsPrivate

False (1)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (54)
viruses (32)
fungi (17)
protozoa (4)

Modification

15.994915 (4)
57.021464 (4)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
ITRAQ4plex-117 (1)
MTRAQ heavy (1)

Study type

ChIP-seq (446)
Transcription profiling by array (423)
RNA-seq of coding RNA (254)
ChIP-chip by tiling array (207)
ChIP-chip by array (101)
Other (93)
RNA-seq of non coding RNA (53)
Comparative genomic hybridization by array (42)
Unknown experiment type (40)
Transcription profiling by tiling array (27)
ATAC-seq (17)
DNA-seq (17)
RIP-seq (12)
Ribo-seq (12)
Proteomic profiling by array (12)
Methylation profiling by high throughput sequencing (11)
RNA-seq of coding RNA from single cells (10)
CLIP-seq (9)
High-throughput sequencing (8)
Cell line - High-throughput sequencing (8)
Methylation profiling by array (8)
Animal - High-throughput sequencing (7)
Hi-C (6)
MNase-seq (4)
RNA-seq of total RNA (4)
Single nucleus RNA sequencing (3)
GRO-seq (2)
Transcription profiling by SAGE (2)
RNAi profiling by array (2)
Transcription profiling by RT-PCR (2)

Release Date

2013 (449)
2015 (356)
2010 (353)
2014 (349)
2012 (322)
2016 (306)
2021 (294)
2022 (288)
2020 (267)
2023 (243)
2011 (239)
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2024 (209)
2019 (202)
2018 (191)
2017 (191)
2009 (138)
2008 (128)
2005 (105)
2007 (101)
2006 (88)
2000 (88)
1999 (72)
2004 (71)
1998 (69)
2026 (63)
2003 (58)
2002 (57)
2001 (57)
1997 (26)

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SARS-CoV-2 ORF7a Drives Mitochondrial Dysfunction via PDK4 Activation and Complex I Inhibition

SARS-CoV-2 reprograms host metabolism to promote viral replication and evade immune responses. While infection is known to impair mitochondrial function and enhance glycolysis, the role of viral accessory proteins in these alterations remains unclear. Here, we investigate the metabolic impact of ...

2026-07-09 | MTBLS13338 | MetaboLights

Orf virus

Orf virus Genome sequencing and assembly

PRJNA557539 | ENA

Orf virus

Orf virus Genome sequencing

PRJNA213898 | ENA

Orf virus

Orf virus Genome sequencing and assembly

PRJNA1457487 | ENA

Lipidomic analysis of human brain from frontotemporal dementia cases of with GRN and C9orf72 mutations

Not available