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GenomicsNanopore sequencing on yeast expressing 4 murine DNMTs
Localisation of CpG methylation in yeast expressing murine DNMTS Genomic DNA was purified from a control strain and a strain expressing murine DNMTs
ORGANISM(S): Saccharomyces cerevisiae 
2020-09-30 | E-MTAB-9356 | biostudies-arrayexpress
TranscriptomicsNucleosome positioning in H3S57 mutants in yeast
In order to test the effect of H3S57 phosphorylation on nucleosome positioning in yeast, nucleosome were mapped in a WT strain, a strain with H3S57A mutation (phospho absent) and a strain H3S57E mutation (phospho mimicking).
ORGANISM(S): Saccharomyces cerevisiae 
2020-12-20 | E-MTAB-6901 | biostudies-arrayexpress
TranscriptomicsNucleosome plasticity during the cell cycle
Nucleosome organization and dynamics play a central role in controlling the DNA accessibility to regulatory factors of many critical cellular functions, especially gene regulation. However, despite extensive studies, the main factors determining nucleosome positioning and its fluctuation during cell...
ORGANISM(S): Saccharomyces cerevisiae 
2014-10-09 | E-MTAB-2839 | biostudies-arrayexpress
TranscriptomicsNucleosome positioning in Yeast expressing active or inactive murine DNMTs
Effect of induced Methylation on Nucleosome positioning in yeast. Mnase digested DNA from a control strain, a strain expressing the 4 murine DNMTs or a strain expressing catalytically inactive murine DNMTs were extracted and sequenced on a hiseq 2000
ORGANISM(S): Saccharomyces cerevisiae 
2021-04-01 | E-MTAB-10254 | biostudies-arrayexpress
TranscriptomicsNucleosome positioning in Yeast with or without induced DNA methylation
Effect of induced Methylation on Nucleosome positioning in yeast. Mnase digested DNA from a control strain and a strain expressing the 4 murine DNMTs were extracted and sequenced on a hiseq 2000
ORGANISM(S): Saccharomyces cerevisiae 
2020-09-30 | E-MTAB-9259 | biostudies-arrayexpress
GenomicsH3K3 me1 and H3K4me3 ChIP-seq in Yeast
H3K4me1 and H3K4me3 in yeast with or without induced DNA methylation
ORGANISM(S): Saccharomyces cerevisiae 
2021-03-10 | E-MTAB-10001 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of yeast strain BY4741 treated with alpha-factor mating pheromone to investigate nucleosome plasticity in G1 stage
Gene expression in G1 stage of Yeast strain BY4741 treated with alpha -factor mating pheromone to investigate nucleosome plasticity
ORGANISM(S): Saccharomyces cerevisiae 
2014-03-01 | E-MTAB-2195 | biostudies-arrayexpress
TranscriptomicsWGBS on yeast expressing 3 or 4 murine DNMTs
Localisation of CpG methylation in yeast expressing murine DNMTS Genomic DNA was purified from a control strain and a strain expressing murine DNMTs, treated with Bisulfite and sequenced on a hiseq 2000
ORGANISM(S): Saccharomyces cerevisiae 
2020-09-30 | E-MTAB-9258 | biostudies-arrayexpress
Transcriptomics3D genome organisation in Yeast with or without induced DNA methylation
Effect of induced Methylation on 3D genome organisation in yeast. Hi-C experiment were performed on yeast expressing or not the 4 murine DNMTs (DNMT1, 3a, 3b and 3L).
ORGANISM(S): Saccharomyces cerevisiae 
2020-09-30 | E-MTAB-9257 | biostudies-arrayexpress
TranscriptomicsMNase-seq data in 4 modified strains of Saccharomyces cerevisiae, treated or not with 10-Phenanthroline
Effect of gene-length modification on Nucleosome periodicity in G1 synchronized cells, treated or untreated with 10-phenanthroline.
ORGANISM(S): Saccharomyces cerevisiae 
2024-09-30 | E-MTAB-13613 | biostudies-arrayexpress
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