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TranscriptomicsTranscriptome analysis of rice roots and tips in early development by massive parallel sequencing
Despite the major physiological dissimilarities between roots and their tips, differences in their gene expression profiles remain largely unexplored. In this research, the transcriptome of rice (Oryza sativa L. subsp. Japonica) mature root tissue and root tips was monitored using mRNA-Seq at 2 time...
ORGANISM(S): Oryza sativa Japonica Group 
2012-01-12 | E-GEOD-30367 | biostudies-arrayexpress
TranscriptomicsTranscriptional reprogramming by root knot and migratory nematode infection in rice
In this study a comparison was made between the local transcriptional changes at two time points upon root knot (Meloidogyne graminicola) and migratory nematode (Hirschmanniella oryzae) infection in rice. Using mRNA-Seq we have characterized specific and general responses of the root challenged with...
ORGANISM(S): Oryza sativa Japonica Group 
2013-01-10 | E-GEOD-35843 | biostudies-arrayexpress
ProteomicsMHZ9 binding proteins identified by MHZ9-GFP IP-MS
Results from the analysis of MHZ9 interaction protein candidates by using immunoprecipitation-mass spectrometry (IP-MS).
ORGANISM(S): Oryza sativa (Rice) 
2023-07-20 | PXD041183 | Pride
Q exactive mass spectrometer (thermo scientific) Oryza_sativa 
ProteomicsA translational regulator MHZ9 modulates ethylene signaling in rice
In this project, we identified a novel RNA-binding protein, MHZ9. And we analyzed the potential proteins interacted with MHZ9 through immunoprecipitation-mass spectrometry (IP-MS). The N-terminal domain of MHZ9 (MHZ9-N) contains a putative RNA splicing and modification domain PRP4. To identify RNA b...
ORGANISM(S): Oryza sativa (Rice) 
2023-07-20 | PXD041240 | Pride
Q exactive mass spectrometer (thermo scientific) Gyf-domain Oryza_sativa Rna-crosslinked peptide 
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