Ot - OmicsDI

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Unknown (3943)
Genomics (580)
Proteomics (430)
Transcriptomics (329)
Other (13)
Metabolomics (7)
Clinical (4)
Models (2)
Methylation profiling (1)

Organisms

Schizosaccharomyces pombe (375)
Mus musculus (264)
Homo sapiens (139)
Bos taurus (7)
Arabidopsis thaliana (5)
Rattus norvegicus (4)
Triticum aestivum (3)
Trypanosoma brucei (2)
Hordeum vulgare (2)
Saccharomyces cerevisiae (2)
Arabidopsis (1)
Rattus (1)
Sminthopsis crassicaudata (1)
Capra hircus (1)
Haplochromis burtoni (1)
Rhizobium leguminosarum (1)
Neisseria meningitidis (1)
Mycobacterium tuberculosis (1)
Ovis aries (1)
Mycobacterium tuberculosis H37Rv (1)
Synechococcus elongatus PCC 7942 = FACHB-805 (1)
Sclerotinia sclerotiorum (1)
Lytechinus variegatus (1)
Drosophila melanogaster (1)
synthetic construct (1)
Mus (1)
Orientia tsutsugamushi (1)
cellular organisms (1)
Platynereis dumerilii (1)
Escherichia coli (1)

Organisms

Mus musculus (381)
Homo sapiens (35)
Eggerthia catenaformis OT 569 = DSM 20559 (2)
Chlamydia trachomatis B/Jali20/OT (2)
Chlamydia trachomatis B/TZ1A828/OT (2)
Kordia algicida OT-1 (2)
marine metagenome (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
soil metagenome (2)
Pseudomonas sp. R81 (1)
Pseudomonas sp. R62 (1)
Desulfosporosinus sp. OT (1)
Segatella maculosa OT 289 (1)
Aquipseudomonas alcaligenes OT 69 (1)
Dichotomyctere nigroviridis (1)
Carcinoscorpius rotundicauda (1)
Chlamydia trachomatis B/TW5/OT (1)
Lytechinus variegatus (1)
Rothia kristinae (1)
Oryza meridionalis (1)
Orientia tsutsugamushi (1)
Shewanella (1)
Sclerotinia sclerotiorum (1)
oyster metagenome (1)
Oryctolagus cuniculus (1)
marine sediment metagenome (1)
synthetic construct (1)
Mus (1)

Repository

ENA (515)
pride (375)
geo (206)
biostudies-arrayexpress (171)
EGA (28)
PeptideAtlas (24)
MassIVE (16)
jPOST (7)
MetaboLights (4)
NODE (4)
ExpressionAtlas (2)
BioModels (2)
GNPS (2)
PanoramaPublic (2)
PAXDB (2)
iProX (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (69)
Blood plasma (24)
T cell (19)
Others (17)
Brain (15)
Liver (13)
Plant cell (12)
Epithelial cell (10)
Cell suspension culture (9)
Cerebrospinal fluid (8)
Macrophage (8)
Root (8)
Leaf (8)
Heart (7)
Lung (7)
Blood (7)
Kidney (6)
Blood serum (6)
Spleen (6)
Seedling (5)
Fibroblast (5)
Primary cell (5)
HeLa cell (4)
Permanent cell line cell (4)
Cell line (2)
Kidney (2)
Feces (1)
Lung (1)
Digestive System (1)
Plasma Non-glyco (1)

Disease

Acute leukemia (5)
Non-small cell lung carcinoma (4)
Colon cancer (4)
Trichomoniasis (3)
Melanoma (3)
Cardiovascular system disease (3)
Tuberculosis (3)
Breast cancer (3)
Normal (2)
Colorectal Neoplasms (2)
Paraganglioma (2)
Brain glioblastoma multiforme (2)
Mixed disorder as reaction to stress (2)
Lymphoma (2)
Lung cancer (2)
Sjogren's Syndrome (2)
Glioblastoma (2)
Malignant neoplasm of ovary (2)
COVID-19 (2)
Disease free (2)
Pancreatic Neoplasms (1)
Stomach Neoplasms (1)
Acute pancreatitis (1)
Joint inflammation (1)
Interstitial lung disease (1)
Demyelinating disease (1)
Carotid artery occlusion (1)
Salmonellosis (1)
B-cell adult acute lymphocytic leukemia (1)
Pheochromocytoma (1)

Technology Type

Mass Spectrometry (375)
Shotgun proteomics (180)
Bottom-up proteomics (105)
Data-dependent acquisition (43)
Affinity purification coupled with mass spectrometry proteomics (34)
Gel-based experiment (32)
SWATH MS (19)
Data-independent acquisition (15)
Chemical cross-linking coupled with mass spectrometry proteomics (15)
Top-down proteomics (8)
Affinity proteomics (4)
Mass spectrometry (3)
All-ion fragmentation (3)
SRM/MRM (3)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina (various), Illumina (Various) (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Affymetrix 6.0 (1)
NMR spectroscopy (1)
NMR (1)
Metaproteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

TripleTOF 5600 (26)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (5)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (3)
Orbitrap Fusion (3)
Illumina NovaSeq X (2)
ThermoFisher GC Exactive (2)
Agilent 5975C (2)
Orbitrap Fusion ETD (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - positive - reverse phase (2)
Mac (1)
Cell culture reagents and serum (1)
KAPA mRNA HyperPrep kit (1)
Qiagen RNeasy kit (1)
Cell culture reagents and Qiagen RNEasy kit (1)
Axon Instruments GenePix 4000B scanner (1)
NextSeq 1000 (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
Illumina iSeq 100 (1)
NextSeq 550 (1)
NextSeq 500 (1)
Impact II (QTOF) (1)
Orbitrap Astral (1)
Orbitrap Exploris 480 (1)
LTQ Orbitrap Elite (1)
TimsTOF Pro 2 (1)
Orbitrap Eclipse (1)

Publication Date

2025 (91)
2026 (74)
2024 (73)
2022 (69)
2021 (68)
2023 (65)
2014 (52)
2020 (48)
2016 (47)
2019 (35)
2013 (32)
2018 (28)
2010 (26)
2017 (23)
2015 (22)
2012 (19)
2011 (16)
2009 (7)
2008 (7)
2007 (7)
2005 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

CAMT_MYCTU (2)
O53978_MYCTU (2)
DNAJ2_MYCTU (2)
O53319_MYCTU (2)
Q6MX34_MYCTU (2)
I6Y498_MYCTU (2)
PSTS3_MYCTU (2)
TRPG_MYCTU (2)
I6YC91_MYCTU (2)
RBPA_MYCTU (2)
I6WXK4_MYCTU (2)
ILVX_MYCTU (2)
I6Y778_MYCTU (2)
Y2302_MYCTU (2)
EFG_MYCTU (2)
O06396_MYCTU (2)
L7N673_MYCTU (2)
Y1812_MYCTU (2)
ACDP_MYCTU (2)
ATPE_MYCTU (2)
Y1220_MYCTU (2)
GLPD2_MYCTU (2)
P71750_MYCTU (2)
TRPC_MYCTU (2)
P95187_MYCTU (2)
RL22_MYCTU (2)
PSTS1_MYCTU (2)
Q96247 (1)
Q94JM3 (1)
P49677 (1)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (6)
ENSG00000247315 (5)
ENSG00000229353 (4)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17268 (2)
CHEBI:30769 (2)
CHEBI:1148 (2)
CHEBI:16449 (2)
CHEBI:26986 (2)
CHEBI:28300 (2)
CHEBI:27266 (2)
CHEBI:26271 (2)
CHEBI:18237 (2)
CHEBI:17234 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:29016 (2)
CHEBI:28044 (2)
CHEBI:18186 (2)
CHEBI:33699 (1)
CHEBI:35392 (1)
CHEBI:15895 (1)
CHEBI:74105 (1)
CHEBI:37661 (1)
CHEBI:86553 (1)
CHEBI:31882 (1)
CHEBI:82057 (1)
CHEBI:84199 (1)
CHEBI:39291 (1)
CHEBI:39300 (1)
CHEBI:81843 (1)
CHEBI:138192 (1)
CHEBI:4045 (1)

Metabolite Name

Valine (2)
Leucine (2)
Isoleucine (2)
O-acetyl-Serine (1)
5-caffeoyl-trans-Quinic acid (1)
3-caffeoyl-trans-Quinic acid (1)
2-methyl-Malic acid (1)
2-oxo-Glutaric acid (1)
2-hydroxy-Glutaric acid (1)
Gluconic acid-1,5-lactone (1)
N-acetyl-Galactosamine (1)
Galactonic acid-1,4-lactone (1)
S-methyl-Cysteine (1)
4-hydroxy-trans-Cinnamic acid (1)
2-Aminobutanoic acid (1)
D-Glucose-6-phosphate (1)
Propylene-glycol (1)
Glycylproline (1)
Glucarate (1)
Lipid (1)
2-hydroxyvalerate (1)
Myoinositol (1)
Desaminotyrosine (1)
Glucopyranose (1)
3-Hydroxymandelic acid (1)
2-hydroxybutanoic acid (1)
2-hydroxybutyrate (1)
Pyracarbolid (1)
Propargite (1)
Fluazinam (1)

First Public Date

2024 (73)
2023 (69)
2025 (68)
2026 (53)
2020 (45)
2021 (43)
2014 (43)
2022 (35)
2019 (27)
2017 (18)
2013 (15)
2018 (11)
2016 (9)
2015 (6)

Modelling Approach

Ordinary differential equation model (2)

Study status

Completed (4)

Lab affiliation

NCI/NIH CSB (10)
University of Warwick (9)
Head of the Curie Institute Mass Spectrometry Platform (5)
Proteomics Team, Nestlé Institute of Health Sciences, Lausanne, Switzerland (4)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (4)
BIOCEV, First Faculty of Medicine, Charles University, Czech Republic (3)
Institute of Microbiology (3)
Department of Immunobiology, University of Lausanne, Epalinges, Switzerland (3)
Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (3)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25242 Vestec, Czech Republic (3)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (3)
ETH Zurich (3)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (2)
Department of Biochemistry, Faculty of Science, Masaryk University (2)
Institute of Molecular Systems Biology ETH Zurich (2)
Laboratory of Immunity & Cell Communication, BIOCEV, First Faculty of Medicine, Charles University, Vestec, Czech Republic (2)
Department of Modeling of Biological Processes COS, Heidelberg University (2)
Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec and Prague, Czech Republic (2)
Molecular Neuropharmacology and Genetics Laboratory, Department of Neuroscience, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Denmark (2)
Institute of Parasitology Biology Center, Czech Academy of Sciences Branišovská 31 370 05 České Budějovice CZECH REPUBLIC (2)
Department of Physiology, Faculty of Science, Charles University, 128 00 Prague, Czechia (2)
Laboratory of Protein Chemistry and Biochemistry, Institute of Biology, Department of Cell Biology, University of Brasília, Brasília, Brazil (2)
Max Planck Institute of Biophysics (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center (2)
Max-Planck Institute of Biophysics (2)
Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, NY, USA (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (2)
Laboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy (2)
Department of Biology, University of Rochester, NY, 14627, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, 14627, USA (2)
University of Washington Department of Genome Sciences (2)

Keyword

Carcinoid tumor, (1)
Gastroenteropancreatic Neuroendocrine Tumors, (1)
Pulmonary Neuroendocrine Tumors, (1)
Pasireotide LAR, (1)
SOM230 LAR, (1)
Everolimus, (1)
RAD001, (1)
Advanced Neuroendocrine Tumor, (1)
Gastroenteropancreatic System (1)
Chemo radiotherapy (1)
Phase I-II (1)
Somatostatin (1)
Response (1)
Occupational therapy (1)
Pasireotide (1)
Everolimus (1)
Capecitabine (1)
Oxaliplatin (1)

IsPrivate

False (2)

Classification

bacteria (6)

Modification

Not available (1)

Study type

Transcription profiling by array (96)
RNA-seq of coding RNA (22)
ChIP-chip by tiling array (8)
ChIP-seq (6)
Methylation profiling by array (6)
RNA-seq of non coding RNA (5)
Genotyping by array (4)
Interventional (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
DNA-seq (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by RT-PCR (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
MicroRNA profiling by high-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
Bisulfite-seq (1)
ATAC-seq (1)
Proteomic profiling by array (1)

Release Date

2025 (432)
2021 (429)
2022 (428)
2023 (420)
2024 (366)
2020 (306)
2019 (264)
2018 (240)
2016 (213)
2017 (211)
2015 (157)
2014 (150)
2013 (108)
2012 (74)
2011 (70)
2010 (67)
2026 (64)
2009 (39)
2008 (28)
2007 (16)
2006 (14)
2005 (6)
2004 (5)
2002 (3)
2001 (2)
2003 (1)
1997 (1)

Location

Taiwan (1)
Canada (1)
Germany (1)
Sweden (1)

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Desulfosporosinus sp. OT strain:OT

Desulfosporosinus sp. OT genome sequencing

PRJNA61253 | ENA

Aquipseudomonas alcaligenes OT 69 strain:OT 69

Aquipseudomonas alcaligenes OT 69 strain:OT 69 Genome sequencing and assembly

PRJNA202928 | ENA

Proteome profile of Traf6-OE OT-I T cells

Proteome profile of Traf6-OE OT-I T cells and EV OT-I cells after viral transfection

ORGANISM(S): Mus musculus (Mouse)

2025-05-06 | PXD039327 | Pride

Kordia algicida OT-1

Kordia algicida OT-1 Genome sequencing

PRJNA1054976 | ENA

Gene expression by antigen activated OT-I T cells in vivo in the presence and absence of IL-2

Much is known concerning the cellular and molecular basis for CD8+ T memory immune responses. Nevertheless, conditions that selectively support memory generation have remained elusive. Here we show that an immunization regimen that delivers TCR signals through a defined antigenic peptide, inflammato...

ORGANISM(S): Mus musculus

2012-10-03 | E-GEOD-39110 | biostudies-arrayexpress

Kordia algicida OT-1

Algae-lysing bacterium

PRJNA19315 | ENA

RNAseq of control OT-I cells and Eomes-overexpressing OT-I cells

PRJNA506823 | ENA

Photobacterium damselae subsp. piscicida strain:OT-51443

Complete genome sequence of fish pathogenic bacteria, Photobacterium damsela subsp. piscicida, strain OT-51443, isolated from yellowtail (Seriola quinqueradiata) in Japan.

PRJDB5578 | ENA

Chlamydia trachomatis B/TZ1A828/OT

Clinical isolate

PRJEA32653 | ENA

OT-I T cell activation in Lrrc8af/f and Lrrc8af/f Cd4-Cre OT-I mice

PRJNA1020844 | ENA

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5309 Results

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