Outer membrane vesicles

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Repository

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Instrument Platform

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Instrument (1)
Bruker 9 Advance III 500 MHz NMR spectrometer (Bruker, USA) equipped with a Prodigy TCI 10 cryogenic triple-channel probe. (1)
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Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
LTQ XL (ICN) (1)
Thermo Finnigan LTQ XL (1)

Publication Date

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2011 (1)

UNIPROT ID/AC

208964.PA4212 (1)
208964.PA4213 (1)
208964.PA4214 (1)
208964.PA4215 (1)
208964.PA4216 (1)
208964.PA4277 (1)
3MGH_PSEAE (1)
6PGL_PSEAE (1)
A2MGH_PSEAE (1)
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ALGP_PSEAE (1)
ALGR_PSEAE (1)

Metabolite Name

His-Asp (2)
Histidine (2)
EDTA (2)
Flunitrazepam (2)
N6-Acetyllysine (2)
5-Hydroxydopamine (2)
4-Hydroxyproline (2)
4-Aminobutyric acid (GABA) (2)
7-Methylguanine (2)
Sn-Glycerol 3-phosphate (2)
Kynurenic acid (2)
4-Hydroxytriamterene (2)
His-Val (2)
Val-Met (2)
Pro-Gly (2)
Alanine (2)
Thr-Ala (2)
Sarcosine (2)
Phenylalanine (2)
Hypoxanthine (2)
UDP-2-acetamido-3-amino-2,3-dideoxy-alpha-D-glucurote (1)
Tricalcium phosphate (1)
Thiadiazolidinone (1)
TG(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/O-18:0) (1)
TG(22:5(4Z,7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/O-18:0) (1)
TG(22:4(7Z,10Z,13Z,16Z)/O-18:0/22:4(7Z,10Z,13Z,16Z)) (1)
TG(20:3(5Z,8Z,11Z)/O-18:0/20:3(5Z,8Z,11Z)) (1)
TG(18:4(6Z,9Z,12Z,15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/O-18:0) (1)
TG(18:4(6Z,9Z,12Z,15Z)/20:5(5Z,8Z,11Z,14Z,17Z)/O-18:0) (1)
TG(18:4(6Z,9Z,12Z,15Z)/18:4(6Z,9Z,12Z,15Z)/O-18:0) (1)

First Public Date

2024 (19)
2025 (18)
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2026 (13)
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2019 (5)
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2020 (3)
2018 (2)
2016 (2)
2015 (2)
2014 (2)
2017 (1)
2013 (1)

Classification

bacteria (15)
protozoa (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (4)
MicroRNA profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
DNA-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (134)
2023 (129)
2024 (127)
2022 (109)
2021 (91)
2020 (91)
2018 (58)
2019 (55)
2016 (47)
2017 (46)
2015 (41)
2014 (40)
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2012 (19)
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2011 (17)
2010 (14)
2009 (8)
2002 (8)
2008 (7)
2006 (6)
2007 (6)
2004 (5)
2005 (2)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Department of Molecular Pathology, Faculty of Military Health Sciences, University of Defense, Hradec Kralove, Czech Republic (3)
Fourth Hospital of Hebei Medical University (3)
Institute of Microbiology, Department of Microbial Proteomics, Center for Functional Genomics of Microbes, University of Greifswald, 17489 Greifswald, Germany (3)
Department of Biochemistry & Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton 3800, Australia (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Research Unit in Biology of Microorganisms (URBM), Namur Research Institute for life Sciences (Narilis), University of Namur, Namur, Belgium (2)
Aarhus University, Denmark (1)
Australian Institute of Tropical Health and Medicine. Centre for Molecular Therapeutics. James Cook Univerisity, Cairns. (1)
Baker Heart and Diabetes Inst. (1)
Baker Heart and Diabetes Institute (1)
Bavarian Center for Biomolecular Mass Spectrometry, Freising, TU Munich (1)
Biozentrum, University of Basel, Basel, Switzerland (1)
Centro Científico y Tecnológico de Excelencia Ciencia & Vida, Fundación Ciencia & Vida, Santiago, Chile. Instituto Milenio de Oceanografía (IMO), Universidad de Concepción, Concepción, Chile. (1)
Chun-Hung Lin's Lab, Institute of Biological Chemistry, Academia Sinica, No. 128 Academic Road Section 2, Nan-Kang, Taipei, 11529, Taiwan (1)
Cornell University (1)
Department oF Biological Sciences, University of Alberta (1)
Department of Biotechnology, TU Delft, NL (1)
Department of Chemistry and Pharmacy, Chair of Food Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, Erlangen 91058, Germany FAU NeW − Research Center New Bioactive Compounds, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Nikolaus-Fiebiger-Str. 10, Erlangen 91058, Germany (1)
Department of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Department of Life Science (1)
Department of Life Sciences, POSTECH, Pohang, Republic of Korea (1)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (South Korea) (1)
Department of Medical Microbiology and Infectious Diseases University of Manitoba 745 Bannatyne Avenue Winnipeg, MB, Canada, R3E 0J9 (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (1)
Department of Microbiology, Faculty of Medicine, Chulalongkorn University, Pathumwan, Bangkok, Thailand (1)
Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo (1)
Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand (1)
Department of Molecular Microbiology, Washington University School of Medicine, 4940 Parkview Place, Campus Box 8230, St. Louis, MO 63110, USA (1)
Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada, N1G 2W1; bSPARC BioCentre, The Hospital for Sick Children, Toronto, ON, Canada, M5G 0A4. (1)
Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, Oregon 97331, USA (1)

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Lipidomics analysis of outer membrane vesicles and elucidation of the ceramide phosphoinositol biosynthetic pathway in Bacteroides thetaiotaomicron

Not available

ORGANISM(S): Bacteroides thetaiotaomicron

ST001904 | MetabolomicsWorkbench

Localisation of outer membrane proteins in Treponema denticola by quantitative proteome analyses of outer membrane vesicles and cellular fractions

The identification and localisation of outer membrane proteins (Omps) and lipoproteins in pathogenic treponemes such as T. denticola (periodontitis) and T. pallidum (syphilis) has been challenging largely due to the structural uniqueness of their outer membranes (OM), the high abundance of inner mem...

ORGANISM(S): Treponema denticola ATCC 35405

2019-02-20 | PXD011495 | Pride

Biopearling: Chains of interconnected outer membrane vesicles in a marine flavobacterium

Large surface-to-volume ratios provide optimal nutrient uptake conditions for small microorganisms in oligotrophic habitats. The surface area can be increased with appendages. Here we describe chains of interconnecting vesicles protruding from cells of the flavobacterial strain Hel3_A1_48 originatin...

ORGANISM(S): Formosa sp. Hel3_A1_48

2019-07-25 | PXD012522 | Pride

Formosa Algal blooms Flavobacteria Outer membrane vesicles Biopearling

The proteome of Fibrobacter succinogenes S85 outer membrane vesicles

Here, we illustrate the proteomic composition and hydrolytic capacity of outer membrane vesicles (OMVs) produced by F. succinogenes during growth on Avicel cellulose and show that the OMVs are equipped with a highly versatile polysaccharide-degrading machinery. Proteomic assessment identified an enr...

ORGANISM(S): Fibrobacter succinogenes subsp. succinogenes S85

2017-06-30 | PXD005442 | Pride

Outer membrane vesicles Omv Hydrolytic enzymes

Quantitative proteomic analysis of outer membrane vesicles from Fusobacterium nucleatum in the cancer environment

At present, the function of Fusobacterium nucleosocci outer membrane vesicles under normal intestinal environmental pH conditions has been mainly studied, but there are few studies related to the function of Fusobacterium nucleosius outer membrane vesicles under cancer microenvironment pH conditions...

ORGANISM(S): Fusobacterium Nucleatum Subsp. Vincentii

2022-10-18 | PXD037520 |

Gut commensal bacteria Parabacteroides goldsteinii JCM 13446 derived-outer membrane vesicles suppress skin inflammation in psoriasis

Proteomic analysis of outer membrane vesicles derived from Parabacteroides goldsteinii JCM 13446

ORGANISM(S): Parabacteroides Goldsteinii Dsm 19448 = Wal 12034

PXD056885 |

Cross-species proteomic comparison of whole cell lysates, outer membrane vesicles and membrane fractions of Francisella tularensis subsp. tularensis versus subsp. holarctica

Secretion of outer membrane vesicles (OMV) presents an important phenomenon in Gram-negative bacteria and they play multiple roles in their lifestyle including virulence and host-pathogen interaction. Francisella tularensis secretes unusually shaped tubular OMV. We here present a proteomic compariso...

ORGANISM(S): Francisella tularensis Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. holarctica FSC200

2021-02-08 | PXD022406 | Pride

Q-exactive Schus4 Outer membrane vesicles Fsc200 Cross-species proteomic comparison Francisella tularensis

Proteome of mass-produced Escherichia coli outer membrane vesicles

Large-scale production of bacterial extracellular vesicles is a hurdle for their development as novel cancer immunotherapeutic agents. Here, we developed manufacturing processes for mass production of Escherichia coli EVs known as outer membrane vesicles (OMVs). We present a comprehensive proteome o...

ORGANISM(S): Escherichia coli Bacteria

2023-10-24 | PXD043119 | Pride

Escherichia coli Outer membrane vesicles Mass production Lc-ms/ms

mRNA transcript distribution bias between Borrelia burgdorferi bacteria and their outer membrane vesicles

PRJNA471082 | ENA

Lipopolysaccharide Imprinted Polymers for Specific Recognition of Bacterial Outer Membrane Vesicles

We introduce lipopolysaccharide (LPS) molecularly imprinted polymer (MIP) for efficient capturing and analyzing OMVs, enabling a novel approach to bacterial disease diagnosis based on biorecognition materials. LPS, a unique structure of Gram-negative bacteria, acts as a template molecule capable of ...

ORGANISM(S): Escherichia Coli-thermotoga Shuttle Vector Pdh10

PXD056387 |

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