P. berghei - OmicsDI

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Plasmodium berghei ANKA (9)
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cellular organisms (1)

Organisms

Plasmodium berghei (16)
Plasmodium berghei ANKA (11)
Mus musculus (10)
Plasmodium falciparum (9)
Anopheles gambiae (6)
Plasmodium (2)
Plasmodium yoelii yoelii (2)
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mouse gut metagenome (1)
Anopheles stephensi (1)
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unidentified (1)

Repository

ENA (120)
pride (57)
biostudies-arrayexpress (55)
geo (45)
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Tissue

Blood (9)
Blood cell (9)
Gametocyte (7)
Blood plasma (4)
Cell culture (2)
Erythrocyte (2)
Bile (1)
Hemolymph (1)
Hepatocyte (1)
Macrophage (1)
Midgut (1)
Placenta (1)
Saliva (1)
Salivary gland (1)
Schizont (1)
Tachyzoite (1)
Zygote (1)

Disease

Malaria (14)
Plasmodium falciparum malaria (11)
Cerebral malaria (2)
P. berghei NK65 infected erythrocyte's infection (1)
P. berghei ANKA GFP sporozoite's infection (1)
Uninfected 11dpi (1)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)

Technology Type

Mass Spectrometry (57)
Shotgun proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (14)
Bottom-up proteomics (12)
Data-dependent acquisition (2)
Gel-based experiment (2)
SWATH MS (2)
Top-down proteomics (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (3)
FUJIFILM BAS-5000 scanning hardware (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2000 (2)
Tecan LS 300 scanner (1)
418 [Affymetrix] (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
LTQ XL (1)
LTQ XL ETD (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (13)
2010 (13)
2024 (13)
2022 (13)
2019 (12)
2021 (11)
2023 (10)
2015 (9)
2012 (9)
2020 (8)
2014 (8)
2018 (7)
2026 (5)
2017 (5)
2016 (5)
2007 (5)
2013 (4)
2008 (4)
2009 (3)
2006 (3)
2011 (2)
2005 (2)

UNIPROT ID/AC

5833.MAL13P1.267 (2)
5833.MAL13P1.269 (2)
5833.MAL13P1.325 (2)
5833.MAL13P1.334 (2)
5833.MAL7P1.78 (2)
5833.MAL8P1.208 (2)
5833.MAL8P1.320 (2)
5833.PF11_0033 (2)
5833.PF11_0263 (2)
5833.PF11_0512 (2)
5833.PF13_0305 (2)
5833.PF13_0321 (2)
5833.PF14_0001 (2)
5833.PF14_0009 (2)
5833.PF14_0173 (2)
5833.PF14_0734 (2)
5833.PF14_0751 (2)
5833.PF14_0756 (2)
5833.PF14_0759 (2)
5833.PFA0105w (2)
5833.PFA0120c (2)
5833.PFA0705c (2)
5833.PFB0050c (2)
5833.PFB0280w (2)
5833.PFB0925w (2)
5833.PFB0946c (2)
5833.PFC1011c (2)
5833.PFC1075w (2)
5833.PFD0075w (2)
5833.PFD0100c (2)

CHEBI ID

CHEBI:34589 (1)
CHEBI:34587 (1)
CHEBI:34031 (1)
CHEBI:157640 (1)
CHEBI:148564 (1)
CHEBI:2482 (1)
CHEBI:62728 (1)
CHEBI:2290 (1)
CHEBI:80455 (1)
CHEBI:16066 (1)
CHEBI:28453 (1)
CHEBI:81086 (1)
CHEBI:177269 (1)
CHEBI:190406 (1)
CHEBI:15439 (1)
CHEBI:82564 (1)
CHEBI:15769 (1)
CHEBI:82590 (1)
CHEBI:82559 (1)
CHEBI:47248 (1)
CHEBI:177249 (1)
CHEBI:27832 (1)
CHEBI:80612 (1)
CHEBI:28807 (1)
CHEBI:27694 (1)
CHEBI:175586 (1)
CHEBI:4581 (1)
CHEBI:17808 (1)
CHEBI:28279 (1)
CHEBI:35490 (1)

Metabolite Name

1,1-Dichloroethylene (1)
Bromobenzene-3,4-oxide (1)
4-Bromophenol (1)
4-Phosphopantothenoylcysteine (1)
20-Hydroxy-leukotriene B4 (1)
2'-Deoxyinosine triphosphate (1)
Coproporphyrinogen I (1)
Agmatine (1)
N-Acetylneuraminate (1)
Bromobenzene-2,3-oxide (1)
7alpha-Hydroxy-3-oxo-4-cholestenoate (1)
4-Trimethylammoniobutanal (1)
11b-Hydroxyprogesterone (1)
Thromboxane A2 (1)
19(S)-HETE (1)
20-Hydroxyeicosatetraenoic acid (1)
11,12-Epoxyeicosatrienoic acid (1)
14,15-Epoxy-5,8,11-eicosatrienoic acid (1)
8,9-Epoxyeicosatrienoic acid (1)
5,6-Epoxy-8,11,14-eicosatrienoic acid (1)
Prostaglandin I2 (1)
9,10-Epoxyoctadecenoic acid (1)
15(S)-HETE (1)
5-Acetylamino-6-formylamino-3-methyluracil (1)
D-Galactose (1)
D-Fructose (1)
D-Glucose (1)
12,13-EpOME (1)
5-HETE (1)
Uracil (1)

First Public Date

2014 (23)
2024 (20)
2022 (9)
2021 (8)
2020 (8)
2025 (7)
2019 (7)
2016 (7)
2015 (7)
2023 (5)
2026 (4)
2018 (4)
2017 (3)
2013 (3)
2012 (3)
2010 (2)

Classification

protozoa (44)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (7)
Unknown experiment type (3)
RNA-seq of coding RNA from single cells (2)
RIP-chip by array (1)
High-throughput sequencing (1)
Trajectory (1)
Transcription profiling by tiling array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2020 (60)
2023 (58)
2024 (54)
2017 (53)
2014 (53)
2022 (53)
2021 (50)
2018 (50)
2025 (47)
2016 (45)
2019 (44)
2015 (42)
2012 (42)
2013 (37)
2010 (37)
2011 (25)
2009 (20)
2008 (17)
2007 (15)
2026 (7)
2005 (6)
2006 (6)
2001 (4)
2004 (2)
2002 (2)
2003 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Wellcome Trust Sanger Institute (5)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Plateforme P3S - UMS PASS 37 - Sorbonne Universite - INSERM (3)
Department of Microbiology and Molecular Medicine, CMU, University of Geneva, Geneva, Switzerland (2)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, CH-1211 Switzerland (2)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (2)
Institute of Life Sciences, Bhubaneswar, India (2)
Laboratory of Protein Chemistry and Biochemistry, Department of Cell Biology, Institute of Biology, University of Brasilia, Brasilia, DF 70910–900, Brazil (2)
University of Geneva, Faculty of Medicine, Geneva, Switzerland (2)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Center for Infection and Immunity of Lille, Biology of Apicomplexan Parasites, UMR 9017 CNRS, U1019 INSERM, Université de Lille, Institut Pasteur de Lille, Lille, France. (1)
Center for Infection and Immunity of Lille, Inserm U1019-CNRS UMR 8204, Université de Lille, Institut Pasteur de Lille, 1 Rue du Professeur Calmette, F-59000 Lille, France (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH) (1)
Department of Biochemistry and Molecular Biology, Bio21 Institute, The University of Melbourne, Parkville, Victoria, Australia (1)
Department of Biochemistry, University of Cambridge (1)
Department of Immunology, College of Basic Medical Sciences, China Medical University (1)
Department of Molecular Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Switzerland (1)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo São Paulo, Brazil (1)
Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Australia (1)
Emerging Pathogens Institute, University of Florida (1)
Executive Director Instituto de Medicina Molecular Av. Prof. Egas Moniz 1649-028 Lisboa, Portugal Tel: (+351) 217 999 511 (1)
Faculty of Medicine and Health Sciences School of Life Sciences University of Nottingham NG7 2UH United Kingdom (1)
Infectious Diseases, Department of Internal Medicine, Yale School of Medicine, Yale University, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Chevy Chase, MD, 20815, USA (1)
Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, UK (1)
Integrative Parasitology, Centre for Infectious Diseases, University Hospital Heidelberg, Heidelberg University Medical Faculty; Heidelberg, Germany (1)
Iowa State University (1)
Johns Hopkins Bloomberg School of Public Health (1)
MD, FACP, FIDSA, FASTMH, BS Professor of Medicine (Infectious Diseases) and Anthropology, Yale University (1)
Molecular Parasitology and Entomology Unit,Laboratory of Malaria and Vector Research, National Institutes of Health. USA. (1)

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Transcriptomic analysis of Anopheles stephensi salivary glands during Plasmodium berghei infection

RNA-seq of Anopheles stephensi salivary glands during Plasmodium berghei infection

ORGANISM(S): Anopheles stephensi

2015-11-05 | E-MTAB-3964 | biostudies-arrayexpress

Global expression profiling reveals shared and distinct transcript signatures in arrested act2(-) and CDPK4(-) Plasmodium berghei gametocytes

Gametocytogenesis and gametogenesis in malaria parasites are complex processes of cell differentiation and development likely involving many gene products. Gametocytes develop in the blood of the vertebrate host but mature gametocytes are not activated until taken up by the mosquito vector. Several ...

ORGANISM(S): Plasmodium berghei

2015-09-15 | E-GEOD-65032 | biostudies-arrayexpress

RNA-seq analyses of gene expression changes in the salivary glands of Anopheles gambiae elicited by Plasmodium berghei infection

Salivary glands are the only mosquito tissue invaded by Plasmodium sporozoites being a key stage for the effective parasite transmission and maturation, making knowledge regarding Anopheles sialome highly relevant to understand this process. In this study, we report for the first time a transcriptom...

ORGANISM(S): Anopheles gambiae S

2015-06-01 | E-MTAB-3415 | biostudies-arrayexpress

In this study, we applied a proteomic approach to identify proteins differentially released/secreted by female and male gametocytes of the rodent Plasmodium berghei activated to form gametes. We compared secreted molecules of the wild type gametocytes with those of a transgenic line defective in mal...

ORGANISM(S): Plasmodium Berghei Anka (ncbitaxon:5823)

2019-12-04 | MSV000084655 | MassIVE

Loss of Serine/Threonine Protein Phosphatase 6 Severely Impairs Sexual Stage Development in Malaria Parasite Plasmodium berghei

Protein phosphorylation plays a critical role during the development of malaria parasites. Here, we performed a functional analysis of the Plasmodium berghei Ser/Thr protein phosphatase 6 (PbPP6), which was associated with the plasma membrane of macrogametes and ookinetes. Compared to wild-type P. b...

ORGANISM(S): Plasmodium berghei

2025-06-27 | PXD063164 | Pride

Loss of serine/threonine protein phosphatase 6 severely impairs sexual stage development in malaria parasite plasmodium berghei

P. berghei gametocyte-enriched transcripts in vivo in Anopheles coluzzii infected midgut

A. coluzzii infections with either the P. berghei ANKA 2.34 or the P. berghei ANKA 2.33 was used in competitive hybridizations on a 4X44K P. berghei DNA microarray

ORGANISM(S): Plasmodium berghei

2025-02-10 | E-MTAB-12718 | biostudies-arrayexpress

RNA sequencing of two protein phosphatases(ppm2 and ppm5) knockouts in Plasmodium berghei to study their role in the parasite's sexual development

To identify protein phosphatases (PP) that are essential during asexual blood stage development in Plasmodium berghei, we attempted systematic deletion of the 30 P. berghei PP genes using double homologous recombination. Of these, we performed strand-specific RNA-sequencing (RNA-Seq) analysis for 2...

ORGANISM(S): Plasmodium berghei

2014-04-16 | E-MTAB-2215 | biostudies-arrayexpress

Plasmodium berghei

Genome sequencing analysis of Plasmodium berghei mutator parasites

PRJDB2326 | ENA

WGS of P. berghei ANKA clone

PRJEB2114 | ENA

Whole genome RNA micro array analysis of Plasmodium berghei sporozoites infected host cells

mRNA Transcripts expression profile of Plasmodium berghei infected host HepG2 cells with and without SUMO1 over expression. To check the changes in the transcript profiles upon SUMO1 over expression which is responsible for Plasmodium berghei parasite's growth arrest in host HepG2 cells. Agilent one...

ORGANISM(S): Homo sapiens

2016-09-01 | E-GEOD-72049 | biostudies-arrayexpress

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