Page Karen K - OmicsDI

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Genomics (4)
Proteomics (4)
Transcriptomics (3)
Unknown (1)
Metabolomics (1)

Organisms

Homo sapiens (5)
Schizosaccharomyces pombe (1)
Mus musculus (1)
Schmidtea mediterranea (1)

Repository

biostudies-arrayexpress (4)
EGA (3)
MassIVE (3)
MetaboLights (1)
pride (1)

Technology Type

Mass spectrometry (1)
Gel-based experiment (1)
Mass Spectrometry (1)

Instrument Platform

Q Exactive (1)
Q Exactive HF (1)
TripleTOF 6600 (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)

Publication Date

2012 (2)
2010 (2)
2020 (2)
2017 (1)
2023 (1)
2019 (1)

CHEBI ID

CHEBI:10072 (1)
CHEBI:1148 (1)
CHEBI:11814 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:133083 (1)
CHEBI:1387 (1)
CHEBI:14314 (1)
CHEBI:144330 (1)
CHEBI:15318 (1)
CHEBI:15344 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15468 (1)
CHEBI:1547 (1)
CHEBI:15473 (1)
CHEBI:15487 (1)
CHEBI:15517 (1)
CHEBI:15531 (1)
CHEBI:15533 (1)
CHEBI:15539 (1)
CHEBI:15551 (1)
CHEBI:15552 (1)
CHEBI:15555 (1)
CHEBI:15584 (1)

Metabolite Name

(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
1,3-Diaminopropane (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)
2,5-Dihydroxybenzaldehyde (1)
2,5-Dihydroxybenzoic acid (1)
2-(Hydroxymethyl)butanoic acid (1)
2-Amino-3-methoxybenzoic acid (1)
2-Aminoadipic acid (1)
2-Deoxy-5-cytidylic acid (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-D-ribose (1)
2-Deoxyadenosine (1)
2-Deoxyadenosine 5-triphosphate (1)
2-Deoxycytidine (1)
2-Deoxycytidine 5-diphosphate (1)
2-Deoxyguanosine (1)
2-Deoxyguanosine 5-diphosphate (1)
2-Deoxyguanosine 5-triphosphate (1)
2-Deoxyinosine (1)
2-Deoxyribose-5-phosphate (1)
2-Deoxyuridine (1)
2-Deoxyuridine 5-monophosphate (1)

Study type

Transcription profiling by array (2)
ChIP-chip by tiling array (1)
ChIP-seq (1)

Release Date

2012 (2)
2010 (2)
2020 (1)

Lab affiliation

Zoology: Biodiversity and Toxicology, Hasselt University –Campus Diepenbeek, Agoralaan 1, Gebouw D, 3590, Diepenbeek,Belgium. (1)

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Population Architecture using Genomics and Epidemiology (PAGE)

By relating hundreds of thousands of genotypes to only a few phenotypes, mostly in individuals of one ancestry, genome-wide association (GWA) studies are identifying a rapidly growing number of associations. The Population Architecture using Genomics and Epidemiology (PAGE) Study is designed to f...

phs000356.v1.p1 | EGA

Population Architecture using Genomics and Epidemiology (PAGE): Causal Variants Across the Life Course (CALiCo): Atherosclerosis Risk in Communities (ARIC)

CALiCo ARIC
The Atherosclerosis Risk in Communities Study (ARIC), sponsored by the National Heart, Lung and Blood Institute (NHLBI), is a prospective epidemiologic study conducted in four U.S. communities. ARIC is designed to investigate the etiology and natural history of atheroscler...

phs000223.v1.p1 | EGA

Population Architecture using Genomics and Epidemiology (PAGE): Causal Variants Across the Life Course (CALiCo): Coronary Artery Risk Development in Young Adults (CARDIA)

CALiCo CARDIA
The Coronary Artery Risk Development in Young Adults (CARDIA) Study is a study examining how heart disease develops in adults. It began in 1986 with a group of 5115 black and white men and women aged 18-30 years. The participants were selected so that there would be appr...

phs000236.v1.p1 | EGA

Characterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections

Neutrophils have an important role in rapid antimicrobial defenses against and resolution of urinary tract infections (UTIs). We show that a mechanism known as neutrophil extracellular trap (NET) formation is a strategy to combat pathogens in the urinary tract. Viscous aggregates that were present i...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-31 | MSV000080847 | MassIVE

Proteomic and Metabolomic Characterization of COVID-19 Patient Sera MRMHR

Targeted mass spectrometric assays for the 22 proteins in a second test cohort containing 19 COVID-19 patients

Dataset imported into MassIVE from https://www.iprox.org/page/project.html?id=IPX0002171000 on 05/30/20

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-05-30 | MSV000085515 | MassIVE

Pleiotropic actions of miR-153 support colorectal cancer progression by enhanced invasion and chemotherapy resistance

MiRNA expression profiling in 2 colorectal cancer cell lines derived from the same individual.

ORGANISM(S): Homo sapiens

2012-02-02 | E-MEXP-3270 | biostudies-arrayexpress

Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights

Proteomic and Metabolomic Characterization of COVID-19 Patient Sera

Early detection and effective treatment of severe COVID-19 patients remain major challenges. Here, we performed proteomic and metabolomic profiling of sera from 46 COVID-19 and 53 control individuals. We then trained a machine learning model using proteomic and metabolomic measurements from a traini...

ORGANISM(S): Severe Acute Respiratory Syndrome Coronavirus 2 (ncbitaxon:2697049) Homo Sapiens (ncbitaxon:9606)

2020-05-29 | MSV000085507 | MassIVE

MicroRNA expression in the newborn mouse cochlea and vestibule

MicroRNAs (miRNAs) inhibit the translation of target mRNAs and affect, directly or indirectly, the expression of a large portion of the protein-coding genes. This study focuses on miRNAs that are expressed in the mouse cochlea and vestibule, the two inner ear compartments. To identify miRNAs that ar...

ORGANISM(S): Mus musculus

2010-06-20 | E-GEOD-15496 | biostudies-arrayexpress

A carcinogenic trigger to study the function of tumor suppressor genes in Schmidtea mediterranea

Combining the exposure to the human carcinogen cadmium to in silico and proteomic top-down approaches the conserved function of two novel tumor suppressor genes in planarians were disclosed.

ORGANISM(S): Schmidtea mediterranea (Freshwater planarian flatworm)

2019-11-12 | PXD009852 | Pride

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