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TranscriptomicsTranscription profiling of E.coli responses to osmotic and heat stresses
We probed the mechanism of cross-regulation of osmotic and heat stress responses by characterizing the effects of high osmolarity (0.3M vs. 0.0M NaCl) and temperature (43oC vs. 30oC) on the transcriptome of Escherichia coli K12 using E. coli Genome 2 Array (Affymetrix, Inc.). Independent array hybr...
ORGANISM(S): Escherichia coli 
2009-01-14 | E-GEOD-7656 | biostudies-arrayexpress
UnknownGenome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses.
Not available
S-EPMC2395010 | biostudies-literature
UnknownTranscriptional responses of uropathogenic Escherichia coli to increased environmental osmolality caused by salt or urea.
Not available
S-EPMC3536127 | biostudies-literature
UnknownIdentification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline.
Not available
S-EPMC6030203 | biostudies-literature
TranscriptomicsTranscriptional responses of uropathogenic E. coli to stresses caused by sodium chloride or urea.
E. coli which cause urinary tract infections must respond to high osmolarity in the urinary tract as well as the presence of urea. We used microarrays to measure the differntial gene expression of uropathogenic strain CFT073 in conditions of high osmolarity of urea v. minimal media RNA was extracted...
ORGANISM(S): Escherichia coli CFT073 
2012-04-04 | E-GEOD-28399 | biostudies-arrayexpress
MetabolomicsHomeostasis of the biosynthetic E. coli metabolome
Metabolite concentrations vary across conditions and such metabolome changes are relevant for metabolic and gene regulation. Here, we used LC-MS/MS to explore metabolite concentration changes in Escherichia coli. We measured 101 primary metabolites in 19 experimental conditions that include v...
2022-11-02 | MTBLS4249 | MetaboLights
UnknownDifferences in Gut Metabolites and Microbial Composition and Functions between Egyptian and U.S. Children Are Consistent with Their Diets.
Not available
S-EPMC5296411 | biostudies-literature
TranscriptomicsWhole-Genome Transcriptional analysis of Sulfate and Sulfonate assimilation by Bradyrhizobium japonicum USDA 110
The ability of Bradyrhizobium japonicum and B. elkanii strains to utilize alkane and aromatic sulfonates as sole sources of sulfur for growth was investigated. All of the strains tested were able to utilize alkane sulfonates, but not aromatic sulfonates for growth. Whole-genome transcriptional profi...
ORGANISM(S): Bradyrhizobium japonicum 
2010-06-19 | E-GEOD-19039 | biostudies-arrayexpress
UnknownThe networks of human gut microbe-metabolite associations are different between health and irritable bowel syndrome.
Not available
S-EPMC4511929 | biostudies-literature
UnknownDifferential MicroRNA Signatures in the Pathogenesis of Barrett's Esophagus.
Not available
S-EPMC7056055 | biostudies-literature
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