Pan Lijun L - OmicsDI

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Proteomics (3)
Transcriptomics (2)
Metabolomics (2)
Genomics (1)
Unknown (1)

Organisms

Homo sapiens (3)
Oryza sativa (1)

Repository

biostudies-arrayexpress (3)
MassIVE (2)
MetaboLights (2)
iProX (1)

Technology Type

Mass spectrometry assay (2)

Instrument Platform

LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (3)
2023 (2)
2014 (1)
2010 (1)
2015 (1)

Metabolite Name

(+)-Threo-2-Amino-3,4-Dihydroxybutanoic Acid (1)
(10E,12Z)-(9S)-9-Hydroperoxyoctadeca-10,12-Dienoic Acid (1)
(10R,13S,17S)-17-Hydroxy-13-Methyl-10-[(4-Methylphenyl)Methyl]-17-Prop-1-Ynyl-2,6,7,8,12,14,15,16-Octahydro-1H-Cyclopenta[A]Phenanthren-3-One (1)
(2S)-2-(4-Chloroanilino)Propanoic Acid (1)
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-Dihydro-3',5,8'-Trihydroxy-Beta,Kappa-Caroten-6'-One (1)
(5Z,7Z,10Z,13Z,16Z,19Z)-4-Hydroxydocosa-5,7,10,13,16,19-Hexaenoylcarnitine (1)
(8R,9R,10S,13R,14S)-1,2,3,4,5,6,7,8,9,10,11,12,14,15,16,17-Hexadecahydrocyclopenta[A]Phenanthrene-13-Carbaldehyde (1)
(8R,9R,10S,13S,14S)-13-Methyl-1,4,5,6,7,8,9,10,11,12,14,15,16,17-Tetradecahydrocyclopenta[A]Phenanthrene (1)
(E)-Ethenoxyimino-Oxido-Pyrrolidin-1-Ylazanium (1)
(Z)-11-Hexadecenal (1)
1,2-Dioleoyl-Sn-Glycerol (1)
1,2-Ethanediol Monoricinoleate (1)
1,3-Benzodioxolylbutanamine (1)
1,3-Dicyclohexylurea (1)
1-(2,4-Dimethylphenyl)-3-[(3-Morpholin-4-Yloxolan-3-Yl)Methyl]Urea (1)
1-(2-Furanyl)-1-Butanone (1)
1-(Beta-D-Glucopyranosyloxy)-3-Octanone (1)
1-Acetyl-Beta-Carboline (1)
1-Adamantanecarbonyl-Rf-Nh2 (1)
1-Cyclohexyl-3-[[1-(Hydroxymethyl)Cyclopropyl]Methyl]Urea (1)
1-Monomyristin (1)
1-Piperideine (1)
16,16-Dimethyl Prostaglandin E1 (1)
16-B1-Phytoprostane (1)
16-Hydroxyhexadecanoic Acid (1)
17-Aminogeldanamycin (1)
19-Hydroxyprostaglandin E1 (1)
19-Norandrosterone (1)
2,3-Epoxyphylloquinone (1)
2,4-Hexadienyl Propionate (1)

Study type

Transcription profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2026 (1)
2014 (1)
2010 (1)
2019 (1)

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Fine mapping a quantitative trait locus, qSER-7, that controls stigma exsertion rate in rice (Oryza sativa L.).

Not available

S-EPMC6616572 | biostudies-literature

LC-MS/MS analysis of B12 treated SH-SY5Y cells

B12 is a compound that has neuroprotective effects. We investigated the protein expression profile associated with the neuroprotective effects of B12 on human neuronal cells SH-SY5Y using label-free quantitative proteomics.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2015-12-29 | MSV000079437 | MassIVE

Microbiome and metabolome features in inflammatory bowel disease via multi-omics integration analyses across cohorts

The perturbations of the gut microbiota and metabolites are closely associated with the progression of inflammatory bowel disease (IBD). However, inconsistent findings across studies impede a comprehensive understanding of their roles in IBD and their potential as reliable diagnostic biomarkers. ...

2026-01-28 | MTBLS8713 | MetaboLights

Extracellular Vesicle Biomarkers for Complement System Dysfunction in Schizophrenia

Schizophrenia has a high rate of misdiagnosis, leading to inappropriate or delayed treatment. Combining with extracellular vesicles’ (EVs) proteome profiling and XGBoost-based machine learning, we developed new pan-EVs markers and yielded personalized discrimination scores (PDS) for schizophrenia di...

ORGANISM(S): Homo Sapiens

2023-02-20 | PXD040261 |

methylation array profiles of DNMT1 inhibitor treated high-grade serous ovarian cancer cell-lines

This dataset comprises genome-wide DNA methylation profiles generated using Illumina Infinium methylation arrays (EPIC and EPICv2) to assess the effects of DNA methyltransferase 1 inhibitor (DNMT1i) treatment on CpG methylation patterns in high-grade serous ovarian carcinoma (HGSOC) models. The stud...

ORGANISM(S): Homo sapiens

2026-08-10 | E-MTAB-17176 | biostudies-arrayexpress

Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice

Rice is highly sensitive to drought, and the effect of drought may vary with the different genotypes and development stages. Genome-wide gene expression profiling was used as the initial point to dissect molecular genetic mechanism of this complex trait and provide valuable information for the impro...

ORGANISM(S): Oryza sativa

2010-12-23 | E-GEOD-26280 | biostudies-arrayexpress

RcrR: A Multifunctional Transcriptional Regulator Orchestrating the cariogenic virulence of Streptococcus mutans

We systematically investigated RcrR's contribution to cariogenic virulence using isogenic wild-type, DeltarcrR deletion mutant, and complemented strains. We assessed bacterial growth, biofilm architecture, acid tolerance, and H+-ATPase activity. To delineate the global regulatory network, we inte...

2026-08-06 | MTBLS15272 | MetaboLights

Integrative Analysis of Transcriptomic and Epigenomic Data to Reveal Regulation Patterns for Osteoporosis Risk [methylome]

In this study, we analyzed transcriptome gene expression microarray, epigenomic miRNA microarray and methylome sequencing data simultaneously in PBMs from 5 high hip BMD subjects and 5 low hip BMD subjects. Through integrating the transcriptomic and epigenomic data, firstly we identified BMD-related...

ORGANISM(S): Homo sapiens

2014-10-22 | E-GEOD-62588 | biostudies-arrayexpress

CPTAC CCRCC Discovery Study - DIA Proteome

This is a supplementary study to the CPTAC CCRCC Discovery Study - Proteome. Unlabeled, digested peptide material from individual tissue samples (ccRCC and NAT) was spiked with index Retention Time (iRT) peptides (Biognosys) and subjected to data-independent acquisition (DIA) analysis. Kidney cance...