Pan Lin L - OmicsDI

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Unknown (1817)
Transcriptomics (96)
Proteomics (64)
Metabolomics (21)
Genomics (18)
Multiomics (1)

Organisms

Homo sapiens (68)
Mus musculus (40)
Bombyx mori (18)
Klebsiella pneumoniae (18)
Schizosaccharomyces pombe (18)
Human immunodeficiency virus 1 (18)
Streptomyces coelicolor (13)
Macaca mulatta (4)
Drosophila melanogaster (4)
Pan troglodytes (2)
Zea mays (2)
Escherichia coli (2)
Saccharomyces cerevisiae (2)
uncultured organism (1)
Burkholderia thailandensis (1)
Aspergillus oryzae (1)
Papio anubis (1)
Schizosaccharomyces pombe 972h- (1)
Gorilla gorilla (1)
Oryza sativa (1)
Trypanosoma brucei (1)
Caenorhabditis elegans (1)
Ovis aries (1)
Rasamsonia (1)
Thermomyces (1)
Aspergillus (1)
Gallus gallus (1)
Oryctolagus cuniculus (1)
Glycine max (1)
Arabidopsis thaliana (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (105)
iProX (35)
MetaboLights (21)
pride (18)
MassIVE (7)
EGA (6)
PeptideAtlas (3)
EVA (1)
geo (1)
jPOST (1)
ENA (1)

Tissue

Others (3)
Heart (3)
Cell culture (3)
Peritoneal macrophage (1)
Skeletal muscle fiber (1)
Mycelium (1)
Sperm (1)
Seed (1)
Urine (1)
Early embryonic cell (1)
Macrophage (1)
Cell suspension culture (1)
Testis (1)
Leaf (1)
Primary cell (1)
Hepatocyte (1)
Epithelial cell (1)
Kidney (1)
B cell (1)
Liver (1)
Colon (1)

Disease

Lymphoma (1)
Breast cancer (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (18)
Mass spectrometry (15)
Shotgun proteomics (11)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (21)
Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (9)
TripleTOF 5600 (7)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
Orbitrap Fusion Lumos (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
CellRanger v2.1.0 (1)
10x Genomics Chromium platform (1)
CTC-iChip (1)
The VDJ NextGEM v1.1 10x Genomics Chromium kit (1)
The Miltenyi Biotec Human Tumor Dissociation kit (cat# 130-095-929) (1)
10x Genomics Chromium (1)
Flow Cytometer (1)
Illumina NovaSeq X (1)
NA (1)
NextSeq 2000 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
LTQ (1)
Q Exactive (1)
Liquid Chromatography MS - positive - direct infusion (1)
Liquid Chromatography MS - negative - direct infusion (1)
Liquid Chromatography MS - negative (1)

Publication Date

2025 (24)
2026 (23)
2010 (23)
2014 (16)
2011 (11)
2024 (10)
2022 (10)
2015 (9)
2023 (9)
2021 (7)
2013 (6)
2020 (5)
2012 (5)
2016 (4)
2009 (4)
2017 (3)
2018 (3)
2008 (2)
2019 (2)

UNIPROT ID/AC

Q8NCC5 (3)
Q96SL1 (3)
Q9BRV3 (3)
Q0VAQ4 (3)
Q9UBV7 (3)
O60512 (3)
Q9UBY0 (3)
Q8WWA1 (3)
Q8IZV2 (3)
Q9NPR9 (3)
Q9H8P0 (3)
Q9H1B5 (3)
Q9BZM4 (3)
Q86VZ5 (3)
O60507 (3)
Q9BWQ6 (3)
Q9BRY0 (3)
Q92968 (3)
Q8TCG2 (3)
Q8N565 (3)
Q6NSJ5 (3)
P37287 (3)
O60779 (3)
O60487 (3)
O00220 (3)
Q9Y6A1 (3)
Q9ULQ1 (3)
Q9NY35 (3)
Q9NVV5 (3)
Q9NUM3 (3)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000147251 (2)

CHEBI ID

CHEBI:16359 (3)
CHEBI:15891 (3)
CHEBI:7916 (3)
CHEBI:16704 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:16919 (3)
CHEBI:17368 (3)
CHEBI:191920 (2)
CHEBI:183546 (2)
CHEBI:183527 (2)
CHEBI:79283 (2)
CHEBI:175697 (2)
CHEBI:138522 (2)
CHEBI:173299 (2)
CHEBI:174168 (2)
CHEBI:168628 (2)
CHEBI:145278 (2)
CHEBI:171909 (2)
CHEBI:172648 (2)
CHEBI:169554 (2)
CHEBI:166724 (2)
CHEBI:187993 (2)
CHEBI:137157 (2)
CHEBI:138426 (2)
CHEBI:187204 (2)
CHEBI:169041 (2)
CHEBI:5762 (2)
CHEBI:29673 (2)
CHEBI:61822 (2)

Metabolite Name

Hypoxanthine (5)
N-Oleoyl Glycine (4)
Docosahexaenoic acid (4)
Arachidonic acid (4)
Salicylic acid (4)
Taurine (4)
Inosine (4)
6-Oxopiperidine-2-carboxylic acid (3)
CerP(d18:1/16:0) (3)
Succinyladenosine (3)
Isoleucyl-Valine (3)
N-Linoleoyl GABA (3)
Sulfolithocholylglycine (3)
Phloretin (3)
Methylimidazoleacetic acid (3)
Ganoderic acid L (3)
2-Methylglutaric acid (3)
N-Acetyl-L-methionine (3)
Genistein (3)
N-oleoyl taurine (3)
8,8a-Deoxyoleandolide (3)
Benzoic acid (3)
Styrene (3)
Pantothenic acid (3)
Cotinine (3)
Indole (3)
Taurocholic acid (3)
Indole-3-lactic acid (3)
7-Sulfocholic acid (3)
Sebacic acid (3)

First Public Date

2016 (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (17)
RNA-seq of coding RNA from single cells (12)
ChIP-seq (9)
Other (4)
ChIP-chip by tiling array (3)
Comparative genomic hybridization by array (3)
ScATAC-seq (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Methylation profiling by array (1)
CUT&RUN (1)

Release Date

2025 (308)
2022 (262)
2024 (251)
2023 (242)
2021 (197)
2020 (145)
2019 (90)
2018 (72)
2026 (64)
2017 (58)
2016 (47)
2014 (41)
2015 (37)
2010 (29)
2012 (23)
2013 (21)
2011 (18)
2009 (9)
2007 (3)
2008 (2)
2005 (1)
2003 (1)
1999 (1)

Lab affiliation

Department of Ornamental Horticulture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang District, Chengdu, Sichuan, 611130, P.R. China (1)
Chan Zuckerberg Biohub, Stanford, CA, USA (1)
Institutes of Biomedicine Science, Fudan University (1)
The Second Affiliated Hospital of Jiaxing University (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Department of Molecular and Cellular Oncology, MD Anderson Cancer Center, Houston, TX USA (1)
Medical school of Nanjing Universtiy (1)
Molecular Biology and Biochemistry, Gottfried Schatz Research Center, Medical University of Graz, Graz, Austria; Institute of Pathology, Diagnostic and Research Center for Molecular Biomedicine, Medical University of Graz, Graz, Austria; Omics Center Graz, BioTechMed-Graz, Graz, Austria (1)
Department of Clinic Laboratory, Shanghai Children’s Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, China (1)
The Obstetrics & Gynecology Hospital of Fudan University, Shanghai, china (1)
Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province, Key Laboratory of Biopesticide and Chemical Biology of Education Ministry, Proteomic Research Center, and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China (1)
State Key Laboratory for Conservation and Ulilization of Subtropical Agro-bioresource (1)
National Center for Liver Cancer, Naval Medical University, Shanghai 201805, P.R. China (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
Shanghai Jiao Tong University School of Medicine (1)
Zhejiang University School of Medicine (1)
westlake university (1)
Jinan University (1)

Tags

xref:PubMed:27271479 (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

2024-09-26 | MTBLS7986 | MetaboLights

Pan-analysis of Single Amino-acid Polymorphism

Uncovering dark mass in population proteomics: Pan-analysis of Single Amino-acid Polymorphism (Pan-SAP) revealed quantitative relevance with cognition and aging

ORGANISM(S): Homo Sapiens

2024-12-31 | PXD059327 |

Distribution of Drosophila insulator proteins Mod(mdg4) and L(3)mbt in Kc cells

Here we map the localization of Mod(mdg4), including Mod(mdg4)2.2 specific and Mod(mdg4) common to all isoforms, to chromatin insulators, as well as the lethal-3 malignant brain tumor protein in Drosophila Kc cells. examination of genomic occupancy for Mod(mdg4)2.2, Mod(mdg4)BTB (all isoforms), and ...

ORGANISM(S): Drosophila melanogaster

2012-06-18 | E-GEOD-36393 | biostudies-arrayexpress

Pan-cancer classification by regularized multi-task learning.

Not available

S-EPMC8688544 | biostudies-literature

Targeting ubiquitin-independent proteasome with small molecule increases susceptibility in pan-KRAS mutant cancers

Despite advances in the development of direct KRAS inhibitors, KRAS-mutant cancers continue to exhibit resistance to the currently available therapies. Here, we identified REGγ as a mutant KRAS-associated factor that enhances REGγ transcription through the KRAS intermediate NRF2, suggesting that the...

ORGANISM(S): Homo Sapiens

2025-01-01 | PXD059364 |

Expression data from control and Pbx1-null CMPs and GMPs

The capacity of the hematopoietic system to promptly respond to peripheral demands relies on adequate pools of progenitors able to transiently proliferate and differentiate in a regulated manner. However, little is known about factors that may restrain progenitor maturation to maintain their reserv...

ORGANISM(S): Mus musculus

2013-03-31 | E-GEOD-30028 | biostudies-arrayexpress

Pan-Sarbecovirus Neutralizing Antibodies in BNT162b2-Immunized SARS-CoV-1 Survivors.

Not available

S-EPMC8422514 | biostudies-literature

Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition.

Not available

S-EPMC5766255 | biostudies-literature

Structure-based design of pan-coronavirus inhibitors targeting host cathepsin L and calpain-1.

Not available

S-EPMC10914734 | biostudies-literature