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ModelsHu2020 - E. coli translation model
This translation model consists of 274 biochemical reactions, including 119 reactions with non-linear kinetics. This mechanistic model accounts for the concentrations of mRNA, the ribosome, the different charged tRNAs, and the elongation factors Ts (EF-Ts) and Tu (EF-Tu). We fully parameterized the ...
2020-07-01 | MODEL2006210001 | BioModels
TranscriptomicsGene Expression Circulating B Lymphocytes for Smoking Females
B cells were found to be directly associated with the onset and development of many smoking-induced diseases. However, the in vivo molecular response of B cells underlying the female cigarette smoking remains unknown. Using the genome-wide Affymetrix HG-133A GeneChip® microarray, we compared the gen...
ORGANISM(S): Homo sapiens 
2009-12-25 | E-GEOD-18723 | biostudies-arrayexpress
UnknownPGAP-X: extension on pan-genome analysis pipeline.
Not available
S-EPMC5780747 | biostudies-literature
MetabolomicsSacha inchi oil alleviates gut microbiota dysbiosis and improves hepatic lipid dysmetabolism in high-fat diet-fed rats
Dietary ω-3 polyunsaturated fatty acids (PUFAs) are beneficial for humans against the development of hyperlipidaemia, but the underlying mechanisms are still poorly understood. Here, we demonstrated that oral consumption of sacha inchi oil, which is rich in α-linolenic acid, alleviated dyslipidemia,...
2022-02-21 | MTBLS1225 | MetaboLights
TranscriptomicsTranscription profiling of human B-lymphocytes from postmenopausal female smokers with high or low bone mineral density
B cells produce important cytokines regulate bone metabolism. We comparison gene expression patterns of circulating B cells in blood from 20 postmenopausal female smokers with low or high bone mineral density (BMD): 10 low BMD vs. 10 high BMD. In total 17 differentially expressed genes were identifi...
ORGANISM(S): Homo sapiens 
2009-10-20 | E-GEOD-13850 | biostudies-arrayexpress
MetabolomicsSupplementation of Bacillus sp. DU-106 reduces hypercholesterolemia and ameliorates gut dysbiosis in high-fat diet rats

Gut microbiota modulation by a probiotic is a novel therapy for hypercholesterolemia mitigation. This study initially investigated the potential hypocholesterolemic effect of Bacillus sp. DU-106 in hypercholesterolemic rats and explored its potential relation with gut microbiota. Sprague-Dawley r...

2021-04-08 | MTBLS1168 | MetaboLights
UnknownPGAweb: A Web Server for Bacterial Pan-Genome Analysis.
Not available
S-EPMC6110895 | biostudies-literature
TranscriptomicsTranscription profiling of human circulating B Lymphocytes from patients with high or low bone density
B cells produce important cytokines regulate bone metabolism. We comparison gene expression patterns of circulating B cells in blood from 20 postmenopausal females with low or high bone mineral density (BMD): 10 low BMD vs. 10 high BMD. In total 29 differentially expressed genes were identified incl...
ORGANISM(S): Homo sapiens 
2008-06-18 | E-GEOD-7429 | biostudies-arrayexpress
UnknownA Systems Pharmacology Approach for Identifying the Multiple Mechanisms of Action of the Wei Pi Xiao Decoction for the Treatment of Gastric Precancerous Lesions.
Not available
S-EPMC6378068 | biostudies-literature
UnknownPanGP: a tool for quickly analyzing bacterial pan-genome profile.
Not available
S-EPMC3998138 | biostudies-literature
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