Sort   by:  
 Page size 
TranscriptomicsThe International Cancer Genome project: Pan-Cancer Analysis of Whole Genomes (PCAWG)
The Pan-Cancer Analysis of Whole Genomes (PCAWG) study is an international collaboration to identify common patterns of mutation in more than 2,800 cancer whole genomes from the International Cancer Genome Consortium. Building upon previous work which examined cancer coding regions, this project is ...
ORGANISM(S): Homo sapiens 
2020-02-05 | E-MTAB-5200 | biostudies-arrayexpress
TranscriptomicsThe International Cancer Genome project: Pan-Cancer Analysis of Whole Genomes (PCAWG)- Alternative view by individual
The Pan-Cancer Analysis of Whole Genomes (PCAWG) study is an international collaboration to identify common patterns of mutation in more than 2,800 cancer whole genomes from the International Cancer Genome Consortium. Building upon previous work which examined cancer coding regions, this project is ...
ORGANISM(S): Homo sapiens 
2020-02-05 | E-MTAB-5423 | biostudies-arrayexpress
ProteomicsPan-cancer plasma proteome profiling using SIS recombinant protein fragments reveals downregulation of proteins interacting with immunoglobulins in multiple myeloma
Mass spectrometry based on Data Independent Acquisition (DIA) strategies has developed into powerful tools suitable for precision medicine applications. Assays performed in this setting provide confident protein identification and precise quantification on an absolute scale when combined with stable...
ORGANISM(S): Homo Sapiens 
2024-07-03 | PXD037946 | panorama
TranscriptomicsRNA-seq of tumor-educated platelets enables blood-based pan-cancer, multiclass and molecular pathway cancer diagnostics
We report RNA-sequencing data of 283 blood platelet samples, including 228 tumor-educated platelet (TEP) samples collected from patients with six different malignant tumors (non-small cell lung cancer, colorectal cancer, pancreatic cancer, glioblastoma, breast cancer and hepatobiliary carcinomas). I...
ORGANISM(S): Homo sapiens 
2015-10-30 | E-GEOD-68086 | biostudies-arrayexpress
ProteomicsThe Pan-Cancer Proteome Atlas, a mass spectrometry-based landscape for understanding tumor biology and discovering biomarkers and therapeutic targets
Next-generation quantitative proteomics based on data-independent acquisition mass spectrometry (DIA-MS) enables large-scale sample profiling, a necessity for (pre)clinical studies with heterogeneous samples. To date, most cancer protein profiling studies have focussed on a single cancer type. Here ...
ORGANISM(S): Homo sapiens (Human) 
2025-05-30 | PXD054790 | Pride
Pan-cancer proteome Dia-ms Single shot Mass spectrometry-based proteomics 
GenomicsPan-cancer ctDNA analysis
Pan-cancer circulating tumor DNA detection in over 10,000 real-world Chinese patients
PRJEB36993 | ENA
TranscriptomicsRNA-seq of the primary patient-derived GBM cell line G797 following siRNA-mediated knockdown and pcDNA3.1-Neomycin-mediated overexpression of the lncRNA HOXA10-AS
We used a machine-learning framework to systematically discover prognostic long non-coding RNAs (lncRNAs) in 9,446 patient tumors of 30 types. We identified 166 prognostic lncRNAs whose transcript abundance correlated with patient risk and improved the performance of common clinical variables and mo...
ORGANISM(S): Homo sapiens 
2021-10-02 | E-MTAB-10944 | biostudies-arrayexpress
GenomicsHuman pan-cancer plasma cfRNA study - raw data
This study contains mRNA capture sequencing data from plasma of 266 different human donors. The first, pan-cancer, cohort covers 25 high-grade to metastatic cancer types (8 cancer patients per type) and a control group (8 healthy donors). The validation cohort comprises additional plasma samples fro...
EGAS00001006755 | EGA
TranscriptomicsComprehensive RNA-Seq Dataset for Pan-Cancer Tumor Classification
The following consists of an RNA-Seq cohort comprised of samples from patients diagnosed with various tumor types across the pan-cancer spectrum. Collected at diagnosis, these samples serve as a resource for tumor classification using machine learning classifiers. Process count tables are provided. ...
ORGANISM(S): Homo sapiens 
2024-06-30 | E-MTAB-14038 | biostudies-arrayexpress
GenomicsPan-Prostate Cancer Group Bacterial Genome Recovery
Recovery of bacterial genomes from samples from the pan-prostate cancer group
PRJEB72026 | ENA
Sort   by:  
 Page size