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MetabolomicsDIA-based LC-MS proteomic profiling of serum from asthma patients with different TCM syndromes
Serum samples were collected from healthy controls and asthma patients classified into lung qi deficiency and phlegm turbidity obstructing lung syndromes. DIA LC-MS was performed to acquire proteomic data, differential proteins and related molecular pathways were analyzed to explore serum molecular ...
2026-09-02 | MTBLS14938 | MetaboLights
ProteomicssJIA serum proteome profiling with DIA-MS
We performed a DIA-MS proteomic analysis of sera from systemic juvenile idiopathic arthritis with different activity phases using a high protein depletion process. We profiled the proteins in the sera that differed significantly in their activity phase.
ORGANISM(S): Homo Sapiens (human) 
2022-04-26 | PXD030413 | JPOST Repository
ProteomicsNarrow precursor window for DIA-MS enhances protein identification and quantification
Data independent acquistion (DIA) is becoming widely as a method of choice in quantitation proteomics due to its high reproducibility and quantitation accuracy at high-throughput fashion. In this project, we systematically evaluated the effect of the selected precursor mass range for DIA-MS on the p...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-10-01 | PXD026965 | Pride
Arabidopsis Data independent acqusition (dia) Lc-ms/ms 
ProteomicsE.coli - Whole organism, DIA, SWATHMS (Midhaetal,scidata2020)
abundance based on DIA, SWATHMS, Interaction consistency score: 8.2, Coverage: 49
ORGANISM(S): 511145 
2020-00-00 | 171934967 | PAXDB
UnknownData-Driven Optimization of DIA Mass Spectrometry by DO-MS.
Not available
S-EPMC10591957 | biostudies-literature
ProteomicsDeep proteome analysis by DIA-MS
To expand proteome coverage, the MS range in DIA-MS was examined. In addition, we analyzed host proteins in the feces of control and repeated social defeat stress (R-SDS) model mice by DIA-MS with an optimal MS range.
ORGANISM(S): Homo Sapiens (human) Mus Musculus (mouse) 
2022-04-28 | PXD032698 | JPOST Repository
UnknownNarrow Precursor Mass Range for DIA-MS Enhances Protein Identification and Quantification in Arabidopsis.
Not available
S-EPMC8469718 | biostudies-literature
Proteomics,MultiomicsDIA-Umpire: comprehensive computational framework for data independent acquisition proteomics
This dataset consists of 44 raw MS files, comprising 27 DIA (SWATH) and 15 DDA runs on a TripleTOF 5600 and of two raw mass spectrometry files acquired on a Q Exactive. The composition of the dataset is described in the manuscript by Tsou et al., titled: "DIA-Umpire: comprehensive computational fra...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2017-04-27 | MSV000081023 | MassIVE
Unknownmsproteomics sitereport: reporting DIA-MS phosphoproteomics experiments at site level with ease.
Not available
S-EPMC11239223 | biostudies-literature
ProteomicsDeep proteome analysis by DIA-MS with FAIMS
We aimed to expand the proteome coverage by single-shot measurements using optimizing high-field asymmetric waveform ion mobility spectrometry (FAIMS) parameters in DIA-MS. In addition, we analyzed host proteins in the feces of control and repeated social defeat stress (R-SDS) model mice with optima...
ORGANISM(S): Homo Sapiens (human) Mus Musculus (mouse) 
2022-04-28 | PXD029853 | JPOST Repository
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