Park I S IS - OmicsDI

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Unknown (7748)
Transcriptomics (356)
Genomics (186)
Proteomics (108)
Metabolomics (43)
Genomic (7)
Models (5)
Other (2)
Multiomics (2)

Organisms

Drosophila melanogaster (193)
Homo sapiens (193)
Mus musculus (72)
Arabidopsis thaliana (13)
Rattus norvegicus (10)
Streptomyces venezuelae (6)
Schizosaccharomyces pombe (5)
Bos taurus (5)
Oryza sativa (4)
Candida albicans (3)
Rhodotorula toruloides (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 (2)
Aplysia californica (2)
Macaca mulatta (2)
Lepidium sativum (2)
Oryza sativa Japonica Group (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Danio rerio (2)
Bathyergus suillus (1)
Drosophila hawaiiensis (1)
Microbacterium oxydans (1)
Heliothis virescens (1)
Xerophyta humilis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 (1)
Brassica oleracea (1)
Drosophila mojavensis (1)
Arachis hypogaea (1)
Geospiza magnirostris (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (507)
pride (76)
MetaboLights (43)
EGA (33)
MassIVE (21)
dbGaP (7)
BioModels (5)
ENA (4)
GPMDB (2)
jPOST (2)
PAXDB (2)
PeptideAtlas (2)
geo (1)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (16)
Blood (3)
Liver (3)
Monocyte (3)
Blood plasma (2)
Epithelial cell (2)
Heart (2)
Hepatocyte (2)
Lung (2)
Permanent cell line cell (2)
Skin (2)
Aorta thoracica (1)
Blood cell (1)
Cell line cell (1)
Colon (1)
Colonic cancer cell line (1)
Embryonic stem cell (1)
Endothelial cell (1)
Feces (1)
Fibroblast (1)
Gland (1)
Gonad (1)
HEK-293 cell (1)
Inner ear (1)
Inner medullary collecting duct (1)
Intestine (1)
Kidney (1)
Leaf (1)
Leukocyte (1)
Schwann cell (1)

Disease

Disease free (5)
Prostate adenocarcinoma (3)
Normal (2)
Not Available (2)
Acute leukemia (2)
Hepatocellular carcinoma (2)
Melanoma (2)
Hepatocellular carcinoma-non tumorous region (1)
"hepatocellular adenoma" (1)
Breast carcinoma (invasive ductal) (1)
Locally advanced rectal cancer (1)
Autoimmune disease of blood (1)
Avian influenza (1)
Breast cancer (1)
Cardiovascular system disease (1)
Charcot-Marie-Tooth disease (1)
Cholangiocarcinoma (1)
Chronic lymphocytic leukemia (1)
Colon adenocarcinoma (1)
Colon cancer (1)
Influenza (1)
Mature T-cell and NK-cell lymphoma (1)
Neurofibromatosis 1 (1)
Non-small cell lung carcinoma (1)
Primary sclerosing cholangitis (1)
Progeria (1)
Prostate carcinoma (1)
Spinal muscular atrophy (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (76)
Shotgun proteomics (37)
Mass spectrometry (34)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry assay (7)
Data-dependent acquisition (7)
Top-down proteomics (4)
NMR spectroscopy (3)
Gel-based experiment (3)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina Infinium 1.2M (1)
Illumina MiSeq (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
LTQ Orbitrap (8)
Illumina HiSeq 2000 (6)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (4)
Q Exactive (4)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina HiSeq 4000 (3)
LTQ Orbitrap Velos (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
Illumina HiSeq 3000 (2)
NextSeq 500 (2)
Instrument (2)
LTQ Orbitrap Elite (2)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
NextSeq 500, 75 bp single end lane (1)
Pacbio Revio (1)
Becton Dickinson INFLUX (1)
Other (1)
Axon- GenePix4000B (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1500 (1)
LTQ (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
SolariX (1)

Publication Date

2013 (180)
2011 (64)
2010 (63)
2014 (43)
2012 (42)
2015 (36)
2016 (28)
2023 (26)
2025 (25)
2022 (20)
2008 (20)
2021 (19)
2024 (17)
2026 (17)
2020 (16)
2018 (10)
2017 (8)
2009 (8)
2019 (7)
2007 (6)
2004 (3)
2005 (2)
2006 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
3847.GLYMA02G14521.1 (2)

CHEBI ID

CHEBI:84651 (2)
CHEBI:88544 (2)
CHEBI:64522 (2)
CHEBI:77086 (2)
CHEBI:84644 (2)
CHEBI:73061 (2)
CHEBI:84424 (2)
CHEBI:1879 (2)
CHEBI:58180 (2)
CHEBI:1 (2)
CHEBI:52381 (2)
CHEBI:13534 (2)
CHEBI:50619 (2)
CHEBI:53027 (2)
CHEBI:53026 (2)
CHEBI:58336 (2)
CHEBI:52385 (2)
CHEBI:52384 (2)
CHEBI:52326 (2)
CHEBI:52325 (2)
CHEBI:52324 (2)
CHEBI:52329 (2)
CHEBI:52328 (2)
CHEBI:52327 (2)
CHEBI:61540 (2)
CHEBI:52389 (2)
CHEBI:52615 (2)
CHEBI:52388 (2)
CHEBI:49050 (2)
CHEBI:53040 (2)

Metabolite Name

Glycine (8)
Sucrose (7)
Ribitol (6)
Glucose (6)
Uridine (6)
Urea (5)
Glycerol (5)
Fructose (5)
Spermidine (5)
Putrescine (5)
Citric acid (5)
Threonine (5)
Serine (5)
Phenylalanine (5)
Lysine (5)
Glutamine (5)
Asparagine (5)
Alanine (5)
Taurine (5)
Adenosine (5)
Uracil (5)
Taurine (5)
Glycerophosphocholine (5)
Alpha-tocopherol (4)
Maltose (4)
Ribose (4)
Erythritol (4)
Valine (4)
Tyrosine (4)
Proline (4)

First Public Date

2024 (1)
2016 (1)
2014 (1)
2013 (1)

Modelling Approach

Constraint-based model (5)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Marseille Protéomique Centre de Recherche en Cancérologie de Marseille Institut Paoli Calmettes - Inserm U1068 - CNRS UMR7258 - Aix Marseille Université UM105 27, Bd Leï Roure, BP30059, 13273 Marseille Cedex 9, France (2)
AMU, CNRS, INSERM, Institut Paoli-Calmettes, CRCM (1)
Aix-Marseille Université, CNRS, INSERM, Institut Paoli-Calmettes (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
Associate Professor, Department of Chemistry and Biochemistry, University of Maryland, College Park (1)
Bavarian Center for Biomolecular Mass Spectrometry, Freising, TU Munich (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
CIC bioGUNE Proteomics Platform, Bizkaia Tech. Park. Build 800 (1)
Center Biomol. Struct. & Organization Dept Chemistry & Biochemistry University of Maryland College Park, MD 20742-3360 USA (1)
Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Building 801A, 48160 Derio, Spain. (1)
Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea. School of Biological Sciences, Seoul National University, Seoul, Republic of Korea. (1)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Chief Scientific Officer oNKo-innate Pty Ltd Laboratory Head, Huntington Laboratory Monash Biomedicine Discovery Institute Monash University Victoria Australia (1)
DGIST, Department of new biology, Q-Bio laboratory (1)
Daegu Catholic University School of Medicine (1)
Department Molecular Microbiology John Innes Centre Norwich Research Park Norwich, UK (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, 08826, Republic of Korea (1)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 (1)
Department of Chemistry and Biochemistry, The University of Texas at Dallas (1)
Department of Chemistry, Korea University, Seoul 02841, Republic of Korea (1)
Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia (1)
Department of Immunology & Microbiology, Scripps Research, USA (1)
Department of Life Science, Pohang University of Science and Technology, Pohang, Gyeongbuk, Korea Department of Integrative Biosciences & Biotechnology, Pohang, Gyeongbuk, Republic of Korea (1)
Department of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea (1)
Department of Microbial Proteomics, Institute for Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Microbiology Blavatnik Institute Harvard Medical School Boston, Massachusetts 02115,USA (1)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (3)

Modification

1x(15)N labeled L-valine (1)

Study type

Transcription profiling by array (161)
ChIP-seq (145)
ChIP-chip by tiling array (64)
RNA-seq of coding RNA (54)
Comparative genomic hybridization by array (14)
Unknown experiment type (9)
Other (9)
Transcription profiling by tiling array (7)
Transcription profiling by RT-PCR (6)
RNA-seq of coding RNA from single cells (6)
High-throughput sequencing (4)
RNA-seq of non coding RNA (4)
ChIP-chip by array (3)
Genotyping by array (3)
Methylation profiling by array (3)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of total RNA (3)
Transcription profiling by SAGE (2)
Baseline (1)
Cell line - One-color microarray (1)
RIP-seq (1)
DNA-seq (1)

Release Date

2022 (950)
2023 (849)
2021 (847)
2025 (783)
2024 (735)
2020 (643)
2019 (542)
2018 (455)
2017 (369)
2016 (334)
2013 (316)
2015 (300)
2014 (277)
2011 (174)
2012 (160)
2010 (149)
2026 (115)
2009 (77)
2008 (63)
2007 (38)
2005 (19)
2006 (17)
2004 (14)
2003 (9)
2002 (6)
2001 (5)
2000 (3)
1999 (3)
1997 (1)
1996 (1)

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Metabolomics-Driven Discovery of an Introduced Species and Two Malaysian Piper betle L. Variants

The differences in pungency of 'sirih' imply the probable occurrence of several variants of Piper betle L. in Malaysia. However, the metabolite profiles underlying the pungency of the different variants remain a subject of further research. The differences in metabolite profiles of selected M...

2022-03-21 | MTBLS2585 | MetaboLights

Seasonal Variation in the Diet Composition of Wild Boars (<i>Sus scrofa</i>) Based on Fecal DNA Metabarcoding in Bukhansan National Park, Republic of Korea.

Not available

S-EPMC12729800 | biostudies-literature

Complete mitochondrial genome of an olive baboon (Papio anubis) from Gombe National Park, Tanzania.

Not available

S-EPMC7800945 | biostudies-literature

Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast [RNA-seq]

Spt6 is a highly conserved histone chaperone that interacts directly with both RNA polymerase II and histones to regulate gene expression. To gain a comprehensive understanding of the requirements for this critical factor, we have performed genome-wide analyses of transcription, chromatin structure...

ORGANISM(S): Schizosaccharomyces pombe

2013-10-09 | E-GEOD-49573 | biostudies-arrayexpress

Significantly shorter Fe-S bond in cytochrome P450-I is consistent with greater reactivity relative to chloroperoxidase.

Not available

S-EPMC4580274 | biostudies-literature

Oesophagostomiasis in non-human primates of Gombe National Park, Tanzania.

Not available

S-EPMC5161720 | biostudies-literature

Molecular signatures of human iPSCs highlight sex differences and cancer genes

We compared human female hiPSC lines (all derived from IMR-90 fibroblasts) that were XIST RNA-positive and XIST RNA-negative. We also examined the gene expression patterns for 2 female hIPSCs (derived from different disease model fibroblasts) that were also negative for XIST RNA. hiPS 12D-1 is deri...

ORGANISM(S): Homo sapiens

2013-12-03 | E-GEOD-36233 | biostudies-arrayexpress

Park availability and major depression in individuals with chronic conditions: Is there an association in urban India?

Not available

S-EPMC5601029 | biostudies-literature

Lithocarpus vuquangensis (Fagaceae), a new species from Vu Quang National Park, Vietnam.

Not available

S-EPMC5804287 | biostudies-literature

Proximity to Water Sources and Avoidance of Human Settlements Drive Wild Boar (<i>Sus scrofa</i>) Occupancy During Spring in an Urban-Proximate National Park in South Korea.

Not available

S-EPMC12691439 | biostudies-literature