Park J J - OmicsDI

Show results for

Unknown (44633)
Proteomics (499)
Transcriptomics (243)
Genomics (90)
Metabolomics (74)
Models (17)
Genomic (9)
Other (2)
Multiomics (2)

Organisms

Homo sapiens (206)
Mus musculus (65)
Arabidopsis thaliana (8)
Drosophila melanogaster (6)
Escherichia coli (4)
Streptomyces venezuelae (4)
Rattus norvegicus (4)
Schizosaccharomyces pombe (3)
Candida albicans (3)
Bos taurus (3)
Macaca mulatta (2)
Lepidium sativum (2)
Gallus gallus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Alphainfluenzavirus (1)
Rodentia (1)
Simiiformes sp. (1)
cellular organisms (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Mammalia (1)
Bathyergus suillus (1)
Rhabdomys pumilio (1)
Sphyracephala beccarii (1)
Delphinapterus leucas (1)
Burkholderia glumae BGR1 (1)
Teleopsis quinqueguttata (1)
Canis lupus (1)
Puccinia graminis f. sp. tritici (1)
Brassica oleracea (1)
Ogataea angusta (1)

Organisms

Homo sapiens (3)
Mus musculus (2)
Thermomicrobium roseum DSM 5159 (1)
Bacillus anthracis str. Kruger B (1)
uncultured virus (1)
gut metagenome (1)
freshwater metagenome (1)

Repository

pride (444)
biostudies-arrayexpress (263)
MetaboLights (66)
EGA (55)
MassIVE (36)
BioModels (17)
ENA (14)
dbGaP (9)
GNPS (8)
PanoramaPublic (7)
iProX (3)
jPOST (3)
PAXDB (3)
geo (2)
GPMDB (2)
PeptideAtlas (2)

Tissue

Cell culture (82)
Epithelial cell (46)
Brain (21)
Permanent cell line cell (16)
Blood plasma (13)
Stem cell (10)
Heart (9)
Leaf (9)
Liver (9)
Macrophage (9)
Blood cell (8)
Kidney (8)
B cell (7)
Blood serum (7)
Fibroblast (7)
Lung (7)
Skin (7)
Blood (6)
Cell suspension culture (6)
Embryonic stem cell (5)
Hepatocyte (5)
Monocyte (5)
Colon (4)
Neutrophil (4)
Whole body (4)
Breast (3)
Breast cancer cell line (3)
Cell line cell (3)
Embryo (3)
Digestive System (1)

Disease

Breast cancer (25)
Disease free (20)
Alzheimer's disease (9)
Chronic lymphocytic leukemia (5)
COVID-19 (4)
Acute leukemia (4)
Cholangiocarcinoma (4)
Colon cancer (4)
Malignant neoplasm of ovary (4)
Type 2 diabetes mellitus (4)
Colorectal cancer (3)
Glioblastoma (3)
Lymphoma (3)
Pancreatic cancer (3)
Primary sclerosing cholangitis (3)
Prostate adenocarcinoma (3)
Not Available (2)
Brain glioblastoma multiforme (2)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Gray platelet syndrome (2)
Hepatocellular carcinoma (2)
Huntington Disease (2)
Influenza (2)
Congestive heart failure (1)
Ischemic (1)
"hepatocellular adenoma" (1)
Bordetella pertussis inoculated (1)
Locally advanced rectal cancer (1)
Normal (1)

Technology Type

Mass Spectrometry (444)
Shotgun proteomics (250)
Bottom-up proteomics (92)
Mass spectrometry (56)
Affinity purification coupled with mass spectrometry proteomics (44)
Data-dependent acquisition (40)
Gel-based experiment (24)
SWATH MS (11)
Top-down proteomics (11)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
NMR spectroscopy (9)
SRM/MRM (6)
Data-independent acquisition (5)
Mass spectrometry assay (3)
HDMSE (3)
DiaPASEF (2)
Mass spectrometry imaging (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina OncoArray (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Affymetrix 6.0 (1)
Illumina Infinium 1.2M (1)
Illumina HiSeq 2000 (1)
Unknown (1)
Illumina MiSeq (1)
Affinity proteomics (1)
Olink affinity proteomics (1)

Instrument Platform

LTQ Orbitrap (8)
Illumina HiSeq 2500 (6)
Illumina HiSeq 2000 (6)
Illumina NovaSeq 6000 (5)
Agilent GC 7890A coupled with a single quadrupole MSD 5975C (5)
LTQ Velos ETD (5)
LTQ Orbitrap Velos (5)
Illumina HiSeq 4000 (4)
LTQ Orbitrap Elite (4)
Orbitrap Fusion (4)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Xevo G2 Q-Tof (2)
Q Exactive HF (2)
Instrument (2)
Pacbio Revio (1)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
Becton Dickinson INFLUX (1)
Other (1)
Illumina NovaSeq X (1)
R (1)
HiSeq X Ten (1)
Illumina HiSeq 3000 (1)

Publication Date

2022 (70)
2025 (67)
2023 (63)
2026 (60)
2024 (58)
2021 (56)
2020 (52)
2015 (50)
2018 (43)
2013 (43)
2010 (42)
2019 (41)
2016 (39)
2014 (36)
2012 (34)
2017 (33)
2011 (19)
2009 (11)
2008 (11)
2007 (11)
2005 (5)
2004 (2)
2006 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
P05067 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (24)
CHEBI:15428 (23)
CHEBI:15891 (23)
CHEBI:16704 (22)
CHEBI:17992 (22)
CHEBI:16335 (20)
CHEBI:16708 (20)
CHEBI:28044 (19)
CHEBI:18012 (19)
CHEBI:15741 (19)
CHEBI:27897 (19)
CHEBI:17596 (19)
CHEBI:6650 (18)
CHEBI:17568 (18)
CHEBI:15354 (18)
CHEBI:17295 (18)
CHEBI:15756 (18)
CHEBI:16643 (14)
CHEBI:17148 (13)
CHEBI:16610 (10)
CHEBI:15729 (9)
CHEBI:15346 (7)
CHEBI:22204 (1)
CHEBI:50211 (1)
CHEBI:15625 (1)
CHEBI:17312 (1)
CHEBI:15746 (1)
CHEBI:15414 (1)
CHEBI:15351 (1)
CHEBI:16541 (1)

Metabolite Name

Sucrose (10)
Glucose (10)
Glutamine (9)
Alanine (9)
Inosine (9)
Glycine (9)
Phenylalanine (9)
Taurine (9)
Citric acid (9)
Adenosine (9)
Linoleic acid (9)
Beta-Alanine (8)
Valine (8)
Uridine (8)
Threonine (8)
Proline (8)
Uracil (8)
Glycerol (8)
Glycine (8)
Palmitic acid (8)
Dodecanoic acid (8)
Adenine (8)
Uridine (8)
L-Leucine (8)
L-Phenylalanine (8)
Fructose (7)
Lactate (7)
Glutamate (7)
Citric acid (7)
L-Alanine (7)

First Public Date

2013 (4)
2025 (2)
2023 (2)
2017 (2)
2024 (1)
2022 (1)
2021 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (10)
Constraint-based model (3)
Differential equation model (1)
Physiologically based pharmacokinetic model (1)
Population model (1)

Lab affiliation

Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (11)
Univeristy College Dublin (6)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (5)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (4)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Department of Life Science (3)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (3)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (3)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (3)
Seoul National University (3)
State Key Laboratory of Reproductive Medicine (3)
Center for Natural Product Systems Biology, Korea Institute of Science and Technology (2)
Daegu Catholic University School of Medicine (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea (2)
Department of Life Sciences, Korea University, Seoul 02841, Korea (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (2)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Institute of Bioinformatics 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (2)
Kyung Hee University (2)
Kyungpook national university (2)
Marseille Protéomique Centre de Recherche en Cancérologie de Marseille Institut Paoli Calmettes - Inserm U1068 - CNRS UMR7258 - Aix Marseille Université UM105 27, Bd Leï Roure, BP30059, 13273 Marseille Cedex 9, France (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (2)
Pacific Northwest National Laboratory (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Prometabio Research Institute, prometabio co., ltd. (2)