Park S S - OmicsDI

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Unknown (49599)
Genomics (1878)
Transcriptomics (639)
Proteomics (548)
Metabolomics (91)
Genomic (22)
Models (14)
Other (3)
Clinical (2)
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Organisms

Homo sapiens (372)
Drosophila melanogaster (200)
Mus musculus (144)
Arabidopsis thaliana (24)
Rattus norvegicus (18)
Bos taurus (10)
Escherichia coli str. K-12 substr. MG1655 (9)
Oryza sativa (8)
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Schizosaccharomyces pombe (5)
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Caenorhabditis elegans (4)
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Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 (2)
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Alphainfluenzavirus (1)
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Mammalia (1)

Organisms

hot springs metagenome (1261)
marsh metagenome (153)
lake water metagenome (100)
leaf metagenome (45)
Homo sapiens (13)
rock metagenome (3)
Salmonella enterica subsp. enterica serovar Newport str. SHSN001 (2)
Mus musculus (2)
Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE004 (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE001 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM18005 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM24403 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM22443 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM22697 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM20775 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM30171 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM20776 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM18000 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM21537 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM79_1594 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM75_1280 (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE003 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM22699 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM17619 (1)
Salmonella enterica subsp. enterica serovar Newport str. CVM22707 (1)
Salmonella enterica subsp. enterica serovar Newport str. SHSN014 (1)
Salmonella enterica subsp. enterica serovar Newport str. SHSN012 (1)
Salmonella enterica subsp. enterica serovar Newport str. SHSN009 (1)
Salmonella enterica subsp. enterica serovar Newport str. SHSN008 (1)
Salmonella enterica subsp. enterica serovar Newport str. SHSN006 (1)

Repository

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biostudies-arrayexpress (818)
pride (474)
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geo (2)
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Tissue

Cell culture (94)
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Disease

Breast cancer (21)
Disease free (18)
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Alzheimer's disease (4)
Cardiovascular system disease (4)
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COVID-19 (3)
Lung adenocarcinoma (3)
Myocardial ischemia (3)
Parkinson's disease (3)
Type 2 diabetes mellitus (3)
Lung cancer (3)
Normal (2)
Not Available (2)
Congestive heart failure (1)
Hepatocellular carcinoma-non tumorous region (1)
12 DAI with PepMV-EU isolate (1)
"hepatocellular adenoma" (1)
Bronchioloalveolar carcinoma of lung (1)
Breast carcinoma (invasive ductal) (1)
Bordetella pertussis inoculated (1)
Locally advanced rectal cancer (1)
N/a (1)
Oesophageal cancer (1)
Malignant neoplasm of breast of unspecified site (1)

Technology Type

Mass Spectrometry (475)
Shotgun proteomics (253)
Bottom-up proteomics (108)
Data-dependent acquisition (63)
Mass spectrometry (61)
Affinity purification coupled with mass spectrometry proteomics (45)
Gel-based experiment (23)
SWATH MS (13)
Mass spectrometry assay (12)
Top-down proteomics (11)
NMR spectroscopy (10)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Data-independent acquisition (8)
SRM/MRM (6)
Mass spectrometry imaging (4)
DiaPASEF (4)
HDMSE (3)
NMR spectroscopy assay (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina OncoArray (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Affymetrix 6.0 (1)
Illumina Infinium 1.2M (1)
Illumina HiSeq 2000 (1)
Unknown (1)
Illumina MiSeq (1)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
Illumina HiSeq 2000 (10)
NextSeq 500 (9)
Illumina HiSeq 2500 (7)
Illumina HiSeq 4000 (6)
Illumina NovaSeq X (4)
Sequel (2)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NA (2)
Illumina MiSeq (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
Tapestri Platform (1)
NextSeq 500, 75 bp single end lane (1)
Pacbio Revio (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
GenePix 4200A (1)
Becton Dickinson INFLUX (1)
Other (1)
Axon- GenePix4000B (1)
R (1)

Publication Date

2013 (222)
2026 (96)
2025 (95)
2011 (95)
2010 (93)
2015 (88)
2014 (83)
2012 (82)
2023 (80)
2024 (76)
2022 (73)
2016 (68)
2020 (53)
2019 (51)
2021 (50)
2018 (43)
2017 (39)
2008 (33)
2009 (20)
2007 (15)
2005 (4)
2004 (4)
2006 (3)

UNIPROT ID/AC

A0A0R0K5X3_SOYBN (2)
3847.GLYMA05G03900.1 (2)
I1LYQ5_SOYBN (2)
3847.GLYMA02G41160.2 (2)
K7LBU6_SOYBN (2)
A0A368UIF2_SOYBN (2)
A0A0R0GEU1_SOYBN (2)
K7L749_SOYBN (2)
K7LYV4_SOYBN (2)
I1N6V9_SOYBN (2)
I1LN08_SOYBN (2)
I1N2H6_SOYBN (2)
K7LTB1_SOYBN (2)
I1LX73_SOYBN (2)
I1LB20_SOYBN (2)
A0A0R0H1C4_SOYBN (2)
I1K275_SOYBN (2)
K7KWH3_SOYBN (2)
I1JEC2_SOYBN (2)
I1KCJ1_SOYBN (2)
A0A0R4J5S0_SOYBN (2)
P83094 (1)
P22700 (1)
Q9V4C7 (1)
Q61501 (1)
P13405 (1)
P97377 (1)
Q61457 (1)
Q9JKW8 (1)
P25322 (1)

CHEBI ID

CHEBI:16643 (15)
CHEBI:15414 (3)
CHEBI:84651 (2)
CHEBI:88544 (2)
CHEBI:64522 (2)
CHEBI:77086 (2)
CHEBI:84644 (2)
CHEBI:73061 (2)
CHEBI:84424 (2)
CHEBI:1879 (2)
CHEBI:58180 (2)
CHEBI:1 (2)
CHEBI:52381 (2)
CHEBI:13534 (2)
CHEBI:50619 (2)
CHEBI:53027 (2)
CHEBI:53026 (2)
CHEBI:58336 (2)
CHEBI:52385 (2)
CHEBI:52384 (2)
CHEBI:52326 (2)
CHEBI:52325 (2)
CHEBI:52324 (2)
CHEBI:52329 (2)
CHEBI:52328 (2)
CHEBI:52327 (2)
CHEBI:61540 (2)
CHEBI:52389 (2)
CHEBI:52615 (2)
CHEBI:52388 (2)

Metabolite Name

Taurine (12)
Glucose (11)
L-Proline (11)
L-Leucine (11)
Sucrose (10)
Alanine (10)
L-Asparagine (10)
L-Phenylalanine (10)
L-Tyrosine (10)
Betaine (10)
Glycerol (9)
Uridine (9)
Glycerol (9)
Valine (9)
Glycine (9)
L-Isoleucine (9)
Succinic acid (9)
L-Alanine (9)
L-Valine (9)
Uracil (9)
Adenine (9)
Adenosine (9)
Phenylalanine (9)
Uracil (8)
Inosine (8)
Maltose (8)
Glutamate (8)
D-Glucose (8)
Glutathione (8)
L-Arginine (8)

First Public Date

2026 (631)
2020 (354)
2025 (296)
2018 (164)
2024 (113)
2014 (63)
2017 (9)
2021 (6)
2013 (4)
2023 (3)
2016 (3)
2019 (2)

Modelling Approach

Ordinary differential equation model (8)
Constraint-based model (5)
Population model (1)

Study status

Recruiting (1)
Completed (1)

Lab affiliation

Univeristy College Dublin (6)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (6)
Institute of Bioinformatics , International Technology Park, Bangalore, India (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
Porto Conte Ricerche, Science and Technology Park of Sardinia, Tramariglio, Alghero, Italy (3)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
University of Maryland, College Park (3)
Seoul National University (3)
Chemical and Biological Integrative Research center, Korea Institute of Science and Technology (2)
Kyung Hee University (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
Department of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, Buffalo, New York, United States (2)
Marseille Protéomique Centre de Recherche en Cancérologie de Marseille Institut Paoli Calmettes - Inserm U1068 - CNRS UMR7258 - Aix Marseille Université UM105 27, Bd Leï Roure, BP30059, 13273 Marseille Cedex 9, France (2)
Center for Theragnosis, KIST, Seoul, Korea (2)
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea (2)
Institute of Bioinformatics 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (2)
Department of Life Science (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Ottawa Hospital Research Institute (2)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (2)
Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, NY, USA (2)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School Cancer Biology, Dana-Farber Cancer Institute (2)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (2)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (2)
Institute of Bioinformatics, International Technology Park, Bangalore, Karnataka 560066, India (2)
Kyungpook national university (2)
School of Life Science, Gwangju Institute of Science and Technology, Cheomdangwagiro123, Buk-gu, Gwangju, 61005, Republic of Korea (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)

IsPrivate

False (14)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (3)
COVID-19 (1)

Classification

bacteria (36)

Modification

15.994915 (3)
1x(15)N labeled L-valine (1)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
58.005479 (1)
4 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (338)
ChIP-seq (165)
RNA-seq of coding RNA (102)
ChIP-chip by tiling array (71)
Comparative genomic hybridization by array (28)
Other (11)
RNA-seq of non coding RNA (11)
Transcription profiling by tiling array (10)
Unknown experiment type (9)
Genotyping by array (9)
Methylation profiling by array (9)
RNA-seq of coding RNA from single cells (8)
Transcription profiling by RT-PCR (6)
Methylation profiling by high throughput sequencing (6)
High-throughput sequencing (5)
DNA-seq (5)
RNA-seq of total RNA (5)
ChIP-chip by array (4)
Proteomic profiling by array (4)
Transcription profiling by SAGE (2)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
Transcription profiling by MPSS (1)
Baseline (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Bisulfite-seq (1)
RIP-seq (1)
Other (1)
Observational (1)

Release Date

2025 (5405)
2022 (5396)
2023 (5176)
2021 (4944)
2024 (4677)
2020 (3980)
2019 (3401)
2018 (2824)
2017 (2520)
2016 (2239)
2015 (1973)
2014 (1578)
2013 (1283)
2012 (938)
2011 (862)
2026 (785)
2010 (709)
2009 (467)
2008 (395)
2007 (257)
2006 (173)
2005 (124)
2004 (84)
2003 (72)
2002 (45)
2001 (36)
2000 (31)
1999 (20)
1998 (12)
1997 (8)

Location

India (1)
Australia (1)

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Sex differences modulate the serum metabolome profiles in Parkinson’s disease patients harbouring pathogenic mutations in GBA1, LRRK2, TMEM175, PARK2, PINK1, and PARK7 genes

Background: Sex and genetic background have an impact on Parkinson’s disease (PD) insurgence, but the comprehension of how these factors affect the circulating profile of PD patients is still an aim of study.

Objectives: In this study we aimed to investigate whether genetic background and ...

2026-06-26 | MTBLS12753 | MetaboLights

Effect of PARK7 gene KO on midbrain organoids

Not available

ORGANISM(S): Homo sapiens

ST002327 | MetabolomicsWorkbench

Epigenetic resetting in the Parkinson's disease entail histone modification remodeling.

Parkinson's disease (PD) is a progressive neurodegenerative disorder characterized by the loss of dopaminergic neurons (DN) in the substantia nigra and disrupted cellular maintenance. Here, we demonstrate that NDST3-mediated epigenetic reprogramming halts neuronal degeneration and restores motor...

ORGANISM(S): Homo sapiens (Human)

2026-03-16 | PXD067971 | Pride

Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast [RNA-seq]

Spt6 is a highly conserved histone chaperone that interacts directly with both RNA polymerase II and histones to regulate gene expression. To gain a comprehensive understanding of the requirements for this critical factor, we have performed genome-wide analyses of transcription, chromatin structure...

ORGANISM(S): Schizosaccharomyces pombe

2013-10-09 | E-GEOD-49573 | biostudies-arrayexpress

MeadoWatch: a long-term community-science database of wildflower phenology in Mount Rainier National Park.

Not available

S-EPMC8976009 | biostudies-literature

Complete Sequence of the Mitochondrial Genome of Spirometra ranarum: Comparison with S. erinaceieuropaei and S. decipiens.

Not available

S-EPMC6409219 | biostudies-literature

How to overcome inter-electrode variability and instability to quantify dissolved oxygen, Fe(II), mn(II), and S(-II) in undisturbed soils and sediments using voltammetry.

Not available

S-EPMC3442984 | biostudies-literature

The comparisons of expression pattern reveal molecular regulation of fruit metabolites in S. nigrum and S. lycopersicum.