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Unknown (2890)
Transcriptomics (106)
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Homo sapiens (114)
Chlamydomonas reinhardtii (57)
Pseudomonas canadensis (57)
Marchantia polymorpha subsp. ruderalis (57)
Methylocystis sp. (57)
Exiguobacterium sp. SH31 (57)
Porites pukoensis (57)
Bothrops insularis (57)
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Trypanosoma vivax Y486 (57)
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Organisms

Enterococcus faecalis (1)
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Repository

biostudies-arrayexpress (113)
pride (57)
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Tissue

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Disease

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COVID-19 (1)
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Technology Type

Mass Spectrometry (57)
Shotgun proteomics (33)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (13)
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Illumina HiSeq 2000 (4)
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DiaPASEF (1)
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Instrument Platform

Illumina HiSeq 2000 (4)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina HiSeq 4000 (3)
Q Exactive (3)
LTQ Orbitrap Velos (3)
Orbitrap Fusion Lumos (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
ArrayWoRx Biochip Reader [Applied Precision] (1)
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Illumina HiSeq 2500 (1)
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Direct infusion MS - positive (1)
Direct infusion MS - negative (1)
MaXis (Bruker) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2025 (18)
2012 (17)
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2010 (14)
2022 (13)
2015 (13)
2013 (13)
2011 (11)
2023 (10)
2020 (9)
2008 (8)
2019 (7)
2009 (7)
2007 (7)
2018 (6)
2017 (6)
2014 (6)
2024 (5)
2016 (4)
2026 (4)
2006 (2)
2005 (2)
2003 (1)

UNIPROT ID/AC

Q9BUG6 (2)
P43268 (2)
Q96C34 (2)
Q9BVV8 (2)
P55197 (2)
P07550 (2)
Q9H2G4 (2)
Q9NWS9 (2)
Q6PJ61 (2)
Q13233 (2)
P78317 (2)
Q9Y2J4 (2)
Q9Y2D9 (2)
Q9P242 (2)
Q9H9L7 (2)
Q9H2G9 (2)
Q9BXL6 (2)
Q9BVV6 (2)
Q99728 (2)
Q96GV9 (2)
Q8TBN0 (2)
Q8NFY4 (2)
Q8IY92 (2)
Q86YC2 (2)
Q86XJ1 (2)
Q6NT46 (2)
Q49A88 (2)
Q03112 (2)
P57682 (2)
P22736 (2)

CHEBI ID

CHEBI:18012 (4)
CHEBI:30769 (4)
CHEBI:17345 (3)
CHEBI:15351 (3)
CHEBI:22660 (3)
CHEBI:30915 (3)
CHEBI:32816 (3)
CHEBI:16108 (3)
CHEBI:6650 (3)
CHEBI:15741 (3)
CHEBI:16027 (3)
CHEBI:15345 (2)
CHEBI:15996 (2)
CHEBI:15467 (2)
CHEBI:17552 (2)
CHEBI:16908 (2)
CHEBI:16474 (2)
CHEBI:15422 (2)
CHEBI:30887 (2)
CHEBI:15531 (2)
CHEBI:17489 (2)
CHEBI:18237 (2)
CHEBI:17150 (2)
CHEBI:16356 (2)
CHEBI:15978 (2)
CHEBI:16856 (2)
CHEBI:17858 (2)
CHEBI:16761 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)

Metabolite Name

Alpha-ketoglutarate (3)
Citrate (3)
GTP?? (2)
Glutathione, reduced (2)
2-phosphoglycolate (2)
HMG-CoA (2)
DHAP (2)
CGMP (2)
Acetoacetyl-CoA (2)
GTP (2)
CAMP (2)
NADP (2)
Malonyl-CoA (2)
Isocitrate (2)
NADPH (2)
NAD (2)
GMP (2)
GDP (2)
ATP (2)
NADH (2)
Glutathione, oxidized (2)
Fumarate (2)
Acetyl-CoA (2)
Glycerol 3-phosphate (2)
Succinate (2)
Glucose 6-phosphate (2)
Glutamine (2)
Leucine (2)
Glutamate (2)
Uracil (2)

First Public Date

2024 (1)
2023 (1)
2021 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (76)
RNA-seq of coding RNA (12)
ChIP-seq (8)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
Genotyping by array (2)
Other (2)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
CLIP-seq (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (349)
2021 (345)
2023 (300)
2025 (280)
2024 (245)
2018 (215)
2020 (212)
2019 (158)
2017 (133)
2015 (122)
2014 (101)
2016 (98)
2013 (85)
2012 (80)
2011 (70)
2010 (60)
2026 (43)
2009 (34)
2008 (21)
2007 (15)
2006 (13)
2005 (7)
2002 (5)
2001 (4)
2003 (2)
2004 (2)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

Vividion Therapeutics (4)
The University of Melbourne (4)
The University of Sydney (3)
Peter MacCallum Cancer Centre, Melbourne, Australia Department of Anatomy and Physiology, The University of Melbourne, Melbourne, VIC, Australia (2)
Department of Environmental Toxicology, University of California, Davis, USA (2)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Biomedical Research, Novartis Pharma AG (1)
Chair in Metabolic Systems Biology, Charles Perkins Centre, The University of Sydney, Australia (1)
Director UAB Proteomics Facility, Professor UAB Anesthesiology (1)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center (1)
University of California Davis, College of Agricultural and Envirnmental Sciences, Environmental Toxicology (1)
Charles Perkins Centre and School of Medical Sciences, University of Sydney, Australia (1)
Department of Cell Biology and Physiology, Washington University in St Louis, St Louis, Missouri, USA; Department of Otolaryngology/Head and Neck Surgery, Washington University School of Medicine, St Louis, Missouri, USA. (1)
Novartis Institutes for BioMedical Research, Basel, Switzerland (1)
Technion-Israel Institute of Technology (1)
School of Biosciences University of Sheffield United Kingdom (1)
Centre for High-Throughput Biology, University of British Columbia (1)
Director, Advanced Clinical Biosystems Research Institute, Cedars-Sinai Medical Center (1)
Department of Pharmacology, University of Arizona College of Medicine (1)
Quadram Institute Research Park, Rosalind Franklin Rd, Norwich NR4 7UQ (1)
Director, Advanced Clinical Biosystems Institute, Cedars Sinai Medical Center (1)
Regenerative Medicine Institute, Department of Biomedical Sciences (1)
Bristol Myers Squibb (1)
Department of Laboratory Medicine and Pathology University of Minnesota School of Medicine 420 Delaware Street SE, MMC 609 Minneapolis, MN (1)
Department of Chemistry, The Scripps Research Institute, La Jolla, CA, 92037 (1)
TSRI (1)
Department of Chemistry, The Scripps Research Institute (1)
Leonard P Ullmann Chair in Metabolic Systems Biology, The Charles Perkins Centre School of Life and Environmental Sciences and Sydney Medical School D17 - Charles Perkins Centre | The University of Sydney | NSW | 2006 (1)
Department of Chemistry, Scripps Research, La Jolla, CA 92037, USA (1)
Department of Biochemistry and Pharmacology, Bio21 Institute, University of Melbourne (1)

Tags

pathogen (1)
pathogen:bacterium (1)

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Protein Kinase C Alpha Promotes Tumor Growth by Initiating a Feed-forward Network Involving miR-15a and Cyclin E

Protein Kinase C alpha (PKC) is associated with progression and poor prognosis in head and neck cancer. Previous studies have demonstrated that PKC sustains the proliferative signal by increasing cyclin E expression, leading to enhanced E2F target gene transcription and DNA synthesis. Here we show ...

ORGANISM(S): Homo sapiens

2010-10-08 | E-GEOD-10301 | biostudies-arrayexpress

Comparative Genomic Analysis of Clinical Strains of Campylobacter jejuni from South Africa

Background. The bacterial foodborne pathogen Campylobacter jejuni is a common cause of acute gastroenteritis and is also associated with the postinfectious neuropathies, Guillain-BarrÃ© and Miller Fisher syndromes. This study described the use of multilocus sequence typing and DNA microarrays to e...

ORGANISM(S): Campylobacter jejuni

2010-05-27 | E-GEOD-9862 | biostudies-arrayexpress

What do medical students know about e-cigarettes? A cross-sectional survey from one U.S. medical school.

Not available

S-EPMC5834872 | biostudies-literature

Vitamin E is essential for Purkinje neuron integrity.

Not available

S-EPMC3943241 | biostudies-literature

Tritium-labeled (E,E)-2,5-bis(4'-hydroxy-3'-carboxystyryl)benzene as a probe for β-amyloid fibrils.

Not available

S-EPMC4254541 | biostudies-literature

Transcription profiling of human squamous cell carcinoma of the head and neck cells reveals tumor growth and prognosis of squamous cell carcinoma of the head and neck is linked to protein kinase C alpha

Protein Kinase C alpha (PKC) is a critical mediator of cell signaling and cancer growth. We show that PKC inhibitors decrease proliferation in squamous cell carcinoma of the head and neck (SCCHN) cells and abrogate growth of SCCHN tumors in mouse xenografts. Analysis of gene expression arrays reveal...

ORGANISM(S): Homo sapiens

2009-03-28 | E-GEOD-10299 | biostudies-arrayexpress

Vitamin E sensitive genes in the developing rat fetal brain: a high-density oligonucleotide microarray analysis.

Not available

S-EPMC1832147 | biostudies-literature

Nucleases Encoded by Integrated Elements CJIE2 and CJIE4 Inhibit Natural Transformation of Campylobacter jejuni

The species Campylobacter jejuni is naturally competent for DNA uptake; nevertheless, nonnaturally transformable strains do exist. For a subset of strains we previously showed that a periplasmic DNase, encoded by dns, inhibits natural transformation in C. jejuni. In the present study, genetic factor...

ORGANISM(S): Campylobacter jejuni

2009-11-13 | E-GEOD-18399 | biostudies-arrayexpress

Use of E. coli Purine Nucleoside Phosphorylase in the Treatment of Solid Tumors.

Not available

S-EPMC6224313 | biostudies-literature

Microarray expression in whole brain of Hfe-/-xTfr2mut (double mut) vs wildtype (wt) AKR mice

Transcriptome changes were studied in the brain of 13 week male AKR mice with disruption of two iron regulatory genes, hemochromatosis Hfe and transferrin receptor 2 (Tfr2) compared to age and gender matched wildtype controls. The characterization of these mice is developed by Delima et al. 2012 (De...

ORGANISM(S): Mus musculus

2017-02-09 | GSE70431 | GEO

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