Parker J J - OmicsDI

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Unknown (4179)
Proteomics (146)
Transcriptomics (93)
Genomics (89)
Metabolomics (12)

Organisms

Homo sapiens (132)
Chlamydomonas reinhardtii (129)
Marchantia polymorpha subsp. ruderalis (129)
Methylocystis sp. (129)
Porites pukoensis (129)
Bothrops insularis (129)
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Bothrops jararacussu (129)
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Trypanosoma vivax Y486 (129)
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Mus musculus (21)
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synthetic construct (3)
Campylobacter jejuni (3)
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Campylobacter jejuni subsp. jejuni 81116 (1)
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Organisms

Campylobacter jejuni (2)
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Homo sapiens (1)
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Repository

pride (129)
biostudies-arrayexpress (95)
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Cutaneous malignant melanoma 1 (1)
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COVID-19 (1)
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Technology Type

Mass Spectrometry (129)
Shotgun proteomics (61)
Bottom-up proteomics (24)
SWATH MS (23)
Affinity purification coupled with mass spectrometry proteomics (19)
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Mass spectrometry (9)
Illumina HiSeq 2000 (5)
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Immunopeptidomics (3)
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Affymetrix_U133v2, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 2000 (3)
Q Exactive (3)
LTQ Orbitrap Velos (3)
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Liquid Chromatography MS - positive - reverse phase (2)
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MaXis (Bruker) (1)
Diode array detection MS - - - micrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Liquid Chromatography MS - - - micrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (30)
2010 (24)
2021 (23)
2022 (18)
2023 (17)
2012 (16)
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2019 (13)
2020 (12)
2018 (12)
2015 (11)
2013 (10)
2026 (10)
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2011 (7)
2008 (6)
2007 (6)
2014 (5)
2017 (5)
2006 (3)
2009 (2)
2005 (2)
2003 (1)

UNIPROT ID/AC

Q9BUG6 (2)
P43268 (2)
Q96C34 (2)
Q9BVV8 (2)
P55197 (2)
P07550 (2)
Q9H2G4 (2)
Q9NWS9 (2)
Q6PJ61 (2)
Q13233 (2)
P78317 (2)
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Q86XJ1 (2)
Q6NT46 (2)
Q49A88 (2)
Q03112 (2)
P57682 (2)
P22736 (2)

CHEBI ID

CHEBI:15351 (3)
CHEBI:22660 (3)
CHEBI:18012 (3)
CHEBI:30915 (3)
CHEBI:32816 (3)
CHEBI:16108 (3)
CHEBI:6650 (3)
CHEBI:30769 (3)
CHEBI:15741 (3)
CHEBI:15345 (2)
CHEBI:15996 (2)
CHEBI:15467 (2)
CHEBI:17552 (2)
CHEBI:16908 (2)
CHEBI:16474 (2)
CHEBI:15422 (2)
CHEBI:30887 (2)
CHEBI:15531 (2)
CHEBI:17489 (2)
CHEBI:17345 (2)
CHEBI:18237 (2)
CHEBI:17150 (2)
CHEBI:16356 (2)
CHEBI:15978 (2)
CHEBI:16856 (2)
CHEBI:17858 (2)
CHEBI:16761 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:16449 (2)

Metabolite Name

Alpha-ketoglutarate (3)
Citrate (3)
GTP?? (2)
Glutathione, reduced (2)
2-phosphoglycolate (2)
HMG-CoA (2)
DHAP (2)
CGMP (2)
Acetoacetyl-CoA (2)
GTP (2)
CAMP (2)
NADP (2)
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Isocitrate (2)
NADPH (2)
NAD (2)
GMP (2)
GDP (2)
ATP (2)
NADH (2)
Glutathione, oxidized (2)
Fumarate (2)
Acetyl-CoA (2)
Glycerol 3-phosphate (2)
Succinate (2)
Glucose 6-phosphate (2)
Glutamine (2)
Leucine (2)
Glutamate (2)
Pyruvate (2)

First Public Date

2014 (3)
2016 (2)
2024 (1)
2021 (1)
2013 (1)

Classification

protozoa (2)
bacteria (2)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (10)
Unknown experiment type (7)
Comparative genomic hybridization by array (5)
ChIP-seq (5)
Genotyping by array (2)
Other (2)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (516)
2021 (440)
2023 (419)
2024 (380)
2025 (363)
2020 (347)
2018 (285)
2019 (270)
2017 (223)
2015 (177)
2016 (176)
2014 (147)
2013 (96)
2012 (94)
2011 (78)
2010 (78)
2026 (54)
2009 (36)
2008 (22)
2006 (19)
2007 (17)
2005 (12)
2002 (6)
2004 (5)
2003 (4)
2001 (4)
1999 (3)
1997 (1)

Lab affiliation

The University of Melbourne (32)
The University of Sydney (8)
Vividion Therapeutics (4)
University of Oxford (4)
Cedars-Sinai Medical Center (4)
Professor and Tier 1 Canada Research Chair in Proteinase Proteomics and Systems Biology at the University of British Columbia, Centre for Blood Research (3)
University of California, Davis (2)
Department of Environmental Toxicology, University of California, Davis, USA (2)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Biomedical Research, Novartis Pharma AG (1)
Australian Proteome Analysis Facility, Macquarie University, Sydney, Australia (1)
The University of Dundee (1)
Chair in Metabolic Systems Biology, Charles Perkins Centre, The University of Sydney, Australia (1)
Protein Chemistry and Metabolism Unit St Vincent's Institute of Medical Research (SVI) 9 Princes Street Fitzroy, Victoria 3065 Australia (1)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center (1)
Protein Phosphorylation Laboratory, The Francis Crick Institute (1)
Charles Perkins Centre and School of Medical Sciences, University of Sydney, Australia (1)
The Univeristy of Melbourne (1)
Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA (1)
Gynecologic Cancer Center of Excellence (GYN-COE), HJF, John P. Murtha Cancer Center, Walter Reed National Military Medical Center, Assistant Professor of Gynecologic Surgery and Obstetrics, Uniformed Services University of the Health Sciences (1)
the Sainsbury laboratory (1)
Department of Cell Biology and Physiology, Washington University in St Louis, St Louis, Missouri, USA; Department of Otolaryngology/Head and Neck Surgery, Washington University School of Medicine, St Louis, Missouri, USA. (1)
Parker Institute for Cancer Immunotherapy, Center for Cellular Immunotherapies, Perelman School of Medicine, University of Pennsylvania, South Pavilion Tower, Building 421, Rm 8-103 3400 Civic Center Blvd. Philadelphia, PA 19104-5157 (1)
Queensland University of Technology (QUT), School of Biomedical Sciences, Faculty of Health, Centre for Children’s Health Research, South Brisbane, Queensland, Australia (1)
Novartis Institutes for BioMedical Research, Basel, Switzerland (1)
School of Natural Sciences, Macquarie University, Sydney, Australia Biomolecular Discovery Research Centre, Macquarie University, Sydney, Australia Institute for Glyco-core Research (iGCORE), Nagoya University, Nagoya, 464-8601, Japan (1)
Heart Institute and Advanced Clinical Biosystems Institute, Cedars-Sinai Medical Center (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)

Tags

pathogen (4)
pathogen:protozoan (2)
pathogen:bacterium (2)

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Comparative Genomic Analysis of Clinical Strains of Campylobacter jejuni from South Africa

Background. The bacterial foodborne pathogen Campylobacter jejuni is a common cause of acute gastroenteritis and is also associated with the postinfectious neuropathies, Guillain-BarrÃ© and Miller Fisher syndromes. This study described the use of multilocus sequence typing and DNA microarrays to e...

ORGANISM(S): Campylobacter jejuni

2010-05-27 | E-GEOD-9862 | biostudies-arrayexpress

Nucleases Encoded by Integrated Elements CJIE2 and CJIE4 Inhibit Natural Transformation of Campylobacter jejuni

The species Campylobacter jejuni is naturally competent for DNA uptake; nevertheless, nonnaturally transformable strains do exist. For a subset of strains we previously showed that a periplasmic DNase, encoded by dns, inhibits natural transformation in C. jejuni. In the present study, genetic factor...

ORGANISM(S): Campylobacter jejuni

2009-11-13 | E-GEOD-18399 | biostudies-arrayexpress

Fine-mapping alleles for body weight in LG/J × SM/J F₂ and F(34) advanced intercross lines.

Not available

S-EPMC3308133 | biostudies-literature

The effect of omeprazole on the development of experimental autoimmune encephalomyelitis in C57BL/6J and SJL/J mice.

Not available

S-EPMC4167283 | biostudies-literature

Microarray expression in whole brain of Hfe-/-xTfr2mut (double mut) vs wildtype (wt) AKR mice

Transcriptome changes were studied in the brain of 13 week male AKR mice with disruption of two iron regulatory genes, hemochromatosis Hfe and transferrin receptor 2 (Tfr2) compared to age and gender matched wildtype controls. The characterization of these mice is developed by Delima et al. 2012 (De...

ORGANISM(S): Mus musculus

2017-02-09 | GSE70431 | GEO

Next generation sequencing analysis of transcriptomes of Plasmodium falciparum male and female gametocytes

Investigation of overall expression level in Plasmodium falciparum male and female mature gametocytes, and detection of any transcriptional differences between male and female gametocytes. The Plasmodium falciparum parasite with green fluorescent protein (GFP) expression under the control of alpha t...

ORGANISM(S): Plasmodium falciparum

2016-01-30 | GSE77398 | GEO

Prototypes for 4x44K PAM50 Subtyping

PAM50 intrinsic subtype classification (Parker JS, Mullins M, Cheang MCU, et al: Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes. J Clin Oncol 27:1160-1167, 2009) was used for the Z1031 patient cohort. However, to account for potential technical biases such as differences in ...

ORGANISM(S): Homo sapiens

2011-05-10 | E-GEOD-26082 | biostudies-arrayexpress

Expression analysis of Plasmodium falciparum male and female gametocytes

Investigation of whole genome gene expression level in Plasmodium falciparum male and female mature gametocytes, and detection of any transcriptional differences between male and female gametocytes. The Plasmodium falciparum parasite with green fluorescent protein (GFP) expression under the control ...

ORGANISM(S): Plasmodium falciparum

2016-01-28 | GSE77316 | GEO

Parker Solar Probe Imaging of the Night Side of Venus.

Not available

S-EPMC9286398 | biostudies-literature

Essential Roles of Tbr1 in the Formation and Maintenance of the Orientation-Selective J-RGCs and a Group of OFF-Sustained RGCs in Mouse.

Not available

S-EPMC6542366 | biostudies-literature

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4519 Results

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