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TranscriptomicsRNA-seq analysis determined the effect of pat or cobB mutation on transcriptional levels in Salmonella Typhimurium 14028s.
Salmonella causes a range of diseases in different hosts, including enterocolitis and systemic infection. Lysine acetylation regulates many eukaryotic cellular processes, but its function in prokaryotes is largely unknown. Reversible acetylation in Salmonella Typhimurium depends on acetyltransferase...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 
2016-08-10 | E-GEOD-71907 | biostudies-arrayexpress
ProteomicsPAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples
Aberrations in histone post-translational modifications (hPTMs) have been linked with various pathologies, including cancer, and could represent not only useful biomarkers, but also suggest possible targetable epigenetic mechanisms. We have recently developed an approach, termed pathology tissue ana...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2017-07-17 | PXD006027 | Pride
Laser microdissection Epigenetic marker Histone post-translational modifications Proteomics Mass spectrometry Pat-h-ms Formalin-fixed paraffin embedded 
GenomicsSetaria viridis strain:PAT-5 | cultivar:PAT-5
Setaria viridis strain:PAT-5 | cultivar:PAT-5 Genome sequencing
PRJNA334531 | ENA
GenomicsPAT-ChIP-Seq: a novel tool for the epigenetic profiling of formaldehyde-fixed and paraffin-embedded (FFPE) pathology samples
Epigenetic alterations in the pattern of DNA and histone modifications play a crucial role in cancer development. Analysis of patient samples, however, is hampered by technical limitations in the study of chromatin structure from pathology archives that typically consist of heavily fixed, paraffin-e...
ORGANISM(S): Mus musculus 
2010-12-02 | E-GEOD-21449 | biostudies-arrayexpress
GenomicsTranscriptome sequencing (RNA-Seq) of PAT cells in CAD and control patients for exploring the association between CAD and PAT
Transcriptome sequencing (RNA-Seq) of PAT cells in CAD and control patients for exploring the association between CAD and PAT
PRJNA743540 | ENA
TranscriptomicsUltra-high-density QTL markers mapping for seedling photomorphogenesis mediating Arabidopsis establishment in southern Patagonia
The intent of the experiment was to construct molecular SNP-binning markers of a Col-0 x Pat RIL population, for sensitive QTL mapping. We performed Illumina low-coverage DNA sequencing of plant tissues.
ORGANISM(S): Arabidopsis thaliana 
2021-07-21 | E-MTAB-10387 | biostudies-arrayexpress
GenomicsArabidopsis thaliana Patagonia (Pat) accessions
We sequenced 4 individuals collected in the Patagonia region of Argentina in 2015. Seeds descended from these individuals are now named Pat-1, Pat-2, Pat-3 and Pat-4 and can be found in the ABRC under the accession numbers CS79057-CS79060. We also sequenced libraries with and without DNA repair of a...
PRJEB9862 | ENA
GenomicsTranscriptome analysis of mutant p53 rescued by potassium antimony tartrate (PAT)
Transcriptome analysis of mutant p53 rescued by potassium antimony tartrate (PAT)
PRJNA728694 | ENA
GenomicsPseudomonas aeruginosa strain:GIMC5001:PAT-23
Pseudomonas aeruginosa strain:GIMC5001:PAT-23 Genome sequencing
PRJNA562421 | ENA
GenomicsPseudomonas aeruginosa strain:GIMC5002:PAT-169
Pseudomonas aeruginosa strain:GIMC5002:PAT-169 Genome sequencing
PRJNA562821 | ENA
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