Patel May M - OmicsDI

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Unknown (3374)
Transcriptomics (44)
Proteomics (22)
Metabolomics (10)
Genomics (8)
Models (1)

Organisms

Homo sapiens (46)
Mus musculus (13)
Streptomyces coelicolor (2)
Macaca mulatta (1)
Sorghum bicolor (1)
Bos taurus (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Chlamydomonas sp. HS-5 (1)
Drosophila melanogaster (1)
Medicago truncatula (1)
Mesocricetus auratus (1)
Plasmodium falciparum 3D7 (1)

Repository

biostudies-arrayexpress (46)
pride (18)
MetaboLights (10)
EGA (5)
MassIVE (3)
BioModels (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell line cell (3)
Blood plasma (2)
Blood serum (2)
Cell culture (2)
Lung (2)
Oral epithelium (2)
Accessory sex gland (1)
Ciliary body (1)
Embryonic stem cell (1)
Epithelial cell (1)
Heart (1)
Permanent cell line cell (1)
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Urine (1)

Disease

Unstable atherosclerotic plaque region (1)
Normal (1)
Bladder urachal urothelial carcinoma (1)
Ehlers-Danlos syndrome (1)
Oral cavity cancer (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (9)
Mass spectrometry (7)
Bottom-up proteomics (6)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Illumina HiScanSQ (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Applied biosystems / mds sciex 4700 proteomics analyzer (1)
Applied biosystems / mds sciex q trap (1)
Applied biosystems / mds sciex qstar (1)
Thermo lcq deca (1)
Thermo lcq deca xp (1)
Thermo ltq (1)
UNKNOWN UNKNOWN (1)
Waters q-tof (1)

Publication Date

2013 (7)
2015 (6)
2012 (6)
2011 (6)
2021 (6)
2025 (5)
2010 (5)
2016 (4)
2008 (4)
2005 (4)
2019 (4)
2023 (3)
2017 (3)
2026 (3)
2024 (3)
2014 (2)
2020 (2)
2009 (1)
2006 (1)
2022 (1)
2007 (1)

CHEBI ID

CHEBI:15741 (5)
CHEBI:18300 (4)
CHEBI:27897 (4)
CHEBI:30754 (4)
CHEBI:30769 (4)
CHEBI:10072 (3)
CHEBI:15354 (3)
CHEBI:15584 (3)
CHEBI:15603 (3)
CHEBI:15971 (3)
CHEBI:16015 (3)
CHEBI:16335 (3)
CHEBI:16467 (3)
CHEBI:16643 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16765 (3)
CHEBI:16856 (3)
CHEBI:16914 (3)
CHEBI:17115 (3)
CHEBI:17191 (3)
CHEBI:17295 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17802 (3)
CHEBI:17895 (3)
CHEBI:18012 (3)
CHEBI:18344 (3)
CHEBI:27248 (3)
CHEBI:27823 (3)

Metabolite Name

Adenine (3)
Choline (3)
(3R)-beta-Leucine (2)
1,4-Lactone (2)
1-Pyrroline-4-hydroxy-2-carboxylate (2)
10-Oxodecanoate (2)
2'-O-Methylodoratol (2)
3-Hydroxypropenoate (2)
4-Hydroxybenzaldehyde (2)
4-Oxoproline (2)
7-Methylguanine (2)
Adenosine (2)
Aflatoxin B1 (2)
Atropine (2)
Azelaic acid (2)
Betaine (2)
Bis(2-ethylhexyl) phthalate (2)
Bisphenol A (2)
Butrin (2)
Butylparaben (2)
Coumarin (2)
Cytosine (2)
Dibutyl phthalate (2)
Diethyl phthalate (2)
Diisobutyl phthalate (2)
Diisononyl phthalate (2)
Dodecanedioic acid (2)
Eriocitrin (2)
Erythromycin (2)
Glycolithocholate (2)

IsPrivate

False (1)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

First Public Date

2020 (1)

Modelling Approach

Computational model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (31)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
RNA-seq of non coding RNA (2)
ChIP-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (482)
2021 (409)
2023 (396)
2025 (362)
2024 (329)
2020 (268)
2019 (226)
2018 (175)
2017 (137)
2015 (123)
2016 (120)
2014 (87)
2013 (63)
2012 (47)
2011 (47)
2026 (42)
2010 (29)
2008 (19)
2009 (16)
2007 (9)
2006 (8)
2005 (8)
2004 (5)
2003 (3)
1999 (3)
1998 (3)
2001 (2)
2002 (1)
2000 (1)

Lab affiliation

College of Life Sciences, University of Dundee (2)
Australian National University, ACT, Australia (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom. (1)
Cardiovascular Center of Excellence, Louisiana State University Health Sciences Center, New Orleans, Louisiana, 70112, USA (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
Department of Physiology, Anatomy and Genetics, University of Oxford (1)
Department of Regenerative Medicine and Cell Biology, Medical University of South Carolina, Charleston, SC, 29407 Department of Neurosurgery, Medical University of South Carolina, Charleston, SC, 29407 (1)
Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom (1)
Icahn School of Medicine at Mount Sinai (1)
Institute of Bioinformatics, Bangalore (1)
Institute of Bioinformatics, Unit 1, 7th floor, Discoverer building, ITPL, Whitefield, Bangalore - 560066, Karnataka, India (1)
Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Reserch Scientist, Institute of Bioinformatics, Bangalore (1)
Sequence database group (1)
University of Oxford, Nuffield Department of Medicine, Centre for Medicines Discovery (1)

Tags

xref:EuropePMC:PMC7661003 (1)

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Increased serum catalytic iron may mediate tissue injury and death in patients with COVID-19.

Not available

S-EPMC8490366 | biostudies-literature

Decay of SARS-CoV-2 RNA along the wastewater treatment outfitted with Upflow Anaerobic Sludge Blanket (UASB) system evaluated through two sample concentration techniques.

Not available

S-EPMC7490623 | biostudies-literature

Neuron-targeted caveolin-1 improves neuromuscular function and extends survival in SOD1G93A mice.

Not available

S-EPMC6529340 | biostudies-literature

Comparison of macaque and human L- and M-cone driven electroretinograms.

Not available

S-EPMC8111691 | biostudies-literature

Gene expression analysis in control and HIF-2 alpha deficient murine lung endothelial cells under hypoxia

Journal : Blood. 2009 Jul 9;114(2):469-77. Epub 2009 May 13. Title : Endothelial deletion of hypoxia-inducible factor-2alpha (HIF-2alpha) alters vascular function and tumor angiogenesis. Authors : Skuli N, Liu L, Runge A, Wang T, Yuan L, Patel S, Iruela-Arispe L, Simon MC, Keith B. Abstract : Hyp...

ORGANISM(S): Mus musculus

2009-07-15 | E-GEOD-16067 | biostudies-arrayexpress

Bovine adult versus prepubertal cumulus cells

The present study was undertaken to discover molecular markers in bovine cumulus cells predictive of oocyte competence and elucidate their functional significance. Differences in RNA transcript abundance in cumulus cells harvested from oocytes of adult versus prepubertal animals (model of poor oocy...

ORGANISM(S): Bos taurus

2010-05-25 | E-GEOD-10819 | biostudies-arrayexpress

Increased plasma catalytic iron in patients may mediate acute kidney injury and death following cardiac surgery.

Not available

S-EPMC5137505 | biostudies-literature

Age-dependent effects of the recombinant spike protein/SARS-CoV-2 on the M-CSF- and IL-34-differentiated macrophages in vitro.

Not available

S-EPMC7857081 | biostudies-literature

HPV-DNA testing from self-sampled menstrual blood using M-strip: A proof-of-concept study on feasibility & acceptance of a novel biosampling method.

Not available

S-EPMC12550441 | biostudies-literature

Myocarditis, Myositis, and Myasthenia Gravis: The Complexities of Treating Steroid-Refractory Triple M Syndrome.