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ProteomicsMembrane Proteomics Reveal Contrasting Adaptation Strategies For Marine Cyanobacteria
Shotgun proteomics focusing on the membrane proteomes, of four Synechococcus spp. strains namely CC9311 (clade I), CC9605 (Clade II), WH8102 (clade III) and CC9902 (clade IV) were conducted to gain insight into the amount of resources these unicellular organisms invest into adaptation strategies.
ORGANISM(S): Synechococcus sp. 
2022-08-30 | PXD009805 | Pride
Transporter Cyanobacteria Membrane 
TranscriptomicsTranscriptomic analysis of chlorhexidine shock in Acinetobacter baumannii
In this study the transcriptomic changes occurring in A. baumannii ATCC 17978 in response to shock treament using the biocide chlorhexdine were determined. A. baumannii ATCC 17978 cells were grown at 37°C with shaking (200rpm) in 35mL cultures in MH broth to OD600=0.75, at which time they were spli...
ORGANISM(S): Acinetobacter baumannii 
2013-12-03 | E-GEOD-51525 | biostudies-arrayexpress
ProteomicsPseudomonas aeruginosa LC-MS/MS
Pseudomonas aeruginosa is a major cause of morbidity and mortality in patients with cystic fibrosis (CF). The P. aeruginosa CF isolate PASS4 has reduced ability to catabolise various carbon sources however can grow on DNA as a sole carbon source but, with a higher biomass production than P. aerugino...
ORGANISM(S): Pseudomonas aeruginosa 
2019-06-24 | PXD006742 | Pride
Pseudomonas aeruginosa lc-ms/ms 
TranscriptomicsComparative transcriptional analysis of Acinetobacter baumannii strain ATCC 17978 and strain 17978hm
In this study the transcriptomes of Acinetobacter baumannii strains ATCC 17978 and 17978hm were compared. Strain 17978hm is a hns knockout derivative of strain ATCC 17978. Strain 17978hm displays a hyper-motile phenotype on semi-solid Mueller-Hinton (MH) media (0.25% agar). ATCC 17978 and 17978hm fr...
ORGANISM(S): Acinetobacter baumannii 
2013-08-05 | E-GEOD-40681 | biostudies-arrayexpress
TranscriptomicsGene expression response to copper toxicity between coastal and open ocean strains of marine Synechococcus
Marine cyanobacteria are thought to be the most sensitive of the phytoplankton groups to copper toxicity, yet little is known of the transcriptional response of marine Synechococcus to copper shock. Global transcriptional response to two levels of copper shock was assayed in both a coastal and an o...
ORGANISM(S): Synechococcus sp. CC9311 
2010-05-17 | E-GEOD-13910 | biostudies-arrayexpress
TranscriptomicsPtrA is required for coordinate regulation of gene expression during phosphate depletion in a marine Synechococcus
The genome of the marine Synechococcus sp. WH8102 displays a minimal regulatory network yet physiological and molecular responses of this organism are tuned to episodic limitation for nitrogen and phosphorus. Microarray analyses have demonstrated a key role for the two-component regulatory system, P...
ORGANISM(S): Synechococcus sp. WH 8102 
2010-04-08 | E-GEOD-18511 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of phosphate regulation in Synechococcus sp. WH8102
Primary productivity of open ocean environments, such as those inhabited by marine picocyanobacteria Synechococcus sp.WH8102, are often limited by low inorganic phosphate (P). To observe how this organism copes with P starvation, we constructed a full genome microarray and examined differences in ge...
ORGANISM(S): Synechococcus sp. WH 8102 
2010-05-18 | E-GEOD-13170 | biostudies-arrayexpress
TranscriptomicsThe GacA transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces
Transcriptomic profiling of a gacA mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h. Two-condition experiment, the gacA mutant compared to wild-type Pf-5 grown on pea seed surfaces for 24 h. There are three biological replicates and ...
ORGANISM(S): Pseudomonas protegens 
2012-12-31 | E-GEOD-38630 | biostudies-arrayexpress
TranscriptomicsThe rpoS transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces
Transcriptomic profiling of an rpoS mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h. Two-condition experiment, the rpoS mutant compared to wild-type Pf-5 grown on pea seed surfaces for 24 h. There are three biological replicates and...
ORGANISM(S): Pseudomonas protegens 
2012-12-31 | E-GEOD-38631 | biostudies-arrayexpress
TranscriptomicsThe rpoS transcriptome of Pseudomonas protegens Pf-5 grown in rich medium
Transcriptomic profiling of an rpoS mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown in nutrient broth supplemented with 1% glycerol to OD600=2.0-2.4 (early stationary phase). Two-condition experiment, the rpoS mutant compared to wild-type Pf-5 grown in nutrient ...
ORGANISM(S): Pseudomonas protegens 
2012-12-31 | E-GEOD-38632 | biostudies-arrayexpress
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