Pe fraction - OmicsDI

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Transcriptomics (495)
Unknown (349)
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Homo sapiens (235)
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Caenorhabditis elegans (73)
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Homo sapiens (18)
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viral metagenome (1)
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Repository

biostudies-arrayexpress (652)
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pride (65)
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Technology Type

Mass Spectrometry (72)
Shotgun proteomics (43)
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ESI (7)
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Instrument Platform

NextSeq 500 (47)
Illumina NovaSeq 6000 (43)
Illumina HiSeq 2500 (35)
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GenePix Professional 4200A [Axon Instruments] (4)
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NA (3)
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None (2)
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HISeq2500 (1)
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Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
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Publication Date

2013 (127)
2020 (121)
2015 (88)
2014 (72)
2016 (51)
2021 (40)
2011 (38)
2023 (34)
2010 (32)
2022 (30)
2026 (28)
2025 (25)
2024 (24)
2012 (24)
2019 (23)
2018 (21)
2008 (18)
2005 (10)
2017 (9)
2006 (9)
2009 (5)
2007 (2)
2002 (2)
2004 (1)

UNIPROT ID/AC

14310_ARATH (3)
14311_ARATH (3)
14332_ARATH (3)
14333_ARATH (3)
14334_ARATH (3)
14335_ARATH (3)
14336_ARATH (3)
14337_ARATH (3)
14338_ARATH (3)
14339_ARATH (3)
1A112_ARATH (3)
2A5A_ARATH (3)
2A5B_ARATH (3)
2A5G_ARATH (3)
2AAA_ARATH (3)
2AAB_ARATH (3)
2AAG_ARATH (3)
2AB2A_ARATH (3)
2AB2C_ARATH (3)
2AB2D_ARATH (3)
2ABA_ARATH (3)
2ABB_ARATH (3)
3702.AT3G04400.1 (3)
3702.AT3G53750.1 (3)
3702.AT3G56800.1 (3)
3702.AT3G59540.1 (3)
3702.AT3G62840.1 (3)
3702.AT4G09800.1 (3)
3702.AT4G23570.3 (3)
3702.AT4G33865.1 (3)

CHEBI ID

CHEBI:17750 (3)
CHEBI:15891 (3)
CHEBI:16865 (3)
CHEBI:16750 (3)
CHEBI:16335 (3)
CHEBI:17596 (3)
CHEBI:28792 (2)
CHEBI:71721 (2)
CHEBI:28931 (2)
CHEBI:16709 (2)
CHEBI:22660 (2)
CHEBI:15676 (2)
CHEBI:16708 (2)
CHEBI:506227 (2)
CHEBI:17748 (2)
CHEBI:16988 (2)
CHEBI:29016 (2)
CHEBI:16704 (2)
CHEBI:16857 (2)
CHEBI:30831 (2)
CHEBI:4170 (2)
CHEBI:17148 (2)
CHEBI:17509 (2)
CHEBI:17115 (2)
CHEBI:18050 (2)
CHEBI:16040 (2)
CHEBI:16113 (2)
CHEBI:15318 (2)
CHEBI:16695 (2)
CHEBI:7916 (2)

Metabolite Name

Betaine (3)
Choline (3)
Cytosine (3)
Creatinine (3)
L-Valine (3)
PC(44:12) (2)
PC(38:1) (2)
PC(37:6) (2)
PE(34:2) (2)
PC(37:2) (2)
PC(42:7) (2)
PC(42:6) (2)
PC(40:9) (2)
PC(40:8) (2)
PC(34:5) (2)
LPC(20:3) (2)
LPI(18:0) (2)
Lys-Asp (2)
4-Aminobutanoate (2)
Cer(d18:1/24:1(15Z)) (2)
2-Hydroxyadenine (2)
PC(38:7) (2)
PC(38:5) (2)
PC(38:4) (2)
PC(36:5) (2)
PC(34:4) (2)
PC(32:2) (2)
PC(14:0/22:1(13Z)) (2)
PC(16:0/16:0) (2)
EDTA (2)

First Public Date

2021 (7)
2024 (6)
2014 (5)
2025 (4)
2023 (4)
2026 (3)
2019 (3)
2016 (3)
2018 (2)
2017 (2)
2022 (1)
2020 (1)
2015 (1)

Classification

protozoa (1)
bacteria (1)

Study type

RNA-seq of coding RNA (202)
ChIP-seq (137)
Transcription profiling by array (92)
RNA-seq of non coding RNA (32)
ChIP-chip by tiling array (28)
RNA-seq of coding RNA from single cells (19)
Methylation profiling by high throughput sequencing (19)
Other (16)
RNA-seq of total RNA (15)
Cell line - High-throughput sequencing (12)
ChIP-chip by array (11)
MicroRNA profiling by high throughput sequencing (8)
Unknown experiment type (6)
Methylation profiling by array (6)
ATAC-seq (5)
RIP-seq (5)
High-throughput sequencing (4)
Comparative genomic hybridization by array (4)
DNA-seq (4)
Baseline (3)
Human - High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
Plant - High-throughput sequencing (2)
MNase-seq (1)
Differential (1)
MeDIP-seq (1)
Animal - One-color microarray (1)
MicroRNA profiling by high-throughput sequencing (1)
Animal - Single-cell sequencing (1)

Release Date

2013 (136)
2015 (102)
2014 (84)
2021 (72)
2022 (64)
2023 (63)
2016 (63)
2020 (46)
2011 (44)
2024 (43)
2025 (41)
2018 (41)
2019 (39)
2010 (35)
2012 (30)
2017 (24)
2026 (20)
2008 (19)
2005 (11)
2006 (9)
2009 (6)
2007 (4)
2002 (3)
2004 (1)
2001 (1)

Lab affiliation

Experimental Neurology, University Hospital, Frankfurt am Main, Germany (3)
CECAD Research Center, University of Cologne, Cologne; Germany (2)
Department of Chemistry, Korea University (2)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (2)
University of Edinburgh (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Applied Microbiology, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany (1)
Center for Functional Protein Assemblies, Technical University of Munich, Germany (1)
Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Republic of Korea (1)
Centro de Altos Estudios en Ciencias Humanas y de la Salud (CAECIHS), Universidad Abierta Interamericana (UAI), Buenos Aires, Argentina. Instituto Nacional de Parasitología “Dr Mario Fatala Chaben”, ANLIS-Malbrán, Buenos Aires, Argentina (1)
Department for Neurodegenerative Science Van Andel Institute Grand Rapids, MI (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, Republic of Korea. & Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, Republic of Korea. (1)
Department of Biochemistry and Molecular Biology Proteomics Core Facility LSUHSC New Orleans, LA 70112 (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver BC, Canada (1)
Department of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea (1)
Department of Cellular Biology and Immunology, Lab 201, Instituto de Parasitología y Biomedicina López-Neyra (IPBLN), Consejo Superior de Investigaciones Científicas (CSIC), Spain. (1)
Department of Chemistry, Korea university (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, United States (1)
Department of Internal Medicine, Section on Molecular Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157 (1)
Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology, and College of Medicine or College of Pharmacy, Seoul National University, Seoul, Korea (1)
Department of Nutrition and Food Science, Faculty of Veterinary, Universidad Complutense de Madrid, Spain (1)
Department of Obstetrics and Gynecology, University of Wisconsin-Madison, WI,USA. (1)
Department of Pharmaceutical Biosciences, Uppsala University (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany 2NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Department of biochemistry, UT Southwestern Medical Center (1)
Division Head, WEHI (1)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, UK (1)
Division of Obstetrics and Gynecology, Department of Clinical Sciences Lund, Lund University, Lund, Sweden (1)

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Transcription profile of SSEA-3-positive population of MSCs

Microarray analysis of the gene expression profile of SSEA-3-positive human adipose-derived MSCs were performed. Liposuction aspirates were obtained from the abdomen and thighs. Stromal vascular fraction (SVF) was isolated from the aspirated fat. Muse cells that express human SSEA-3 were collected f...

ORGANISM(S): Homo sapiens

2015-01-07 | E-GEOD-55526 | biostudies-arrayexpress

Transcription profiling of CD34+CD38- vs CD34+CD38+ fractions of human umbilical cord blood and comparison of slow-dividing fraction vs the fast dividing fraction of CD34+/CD38- population

Comparison of the CD34+CD38- versus CD34+CD38+ fractions of human umbilical cord blood and comparison of the slow-dividing fraction versus the fast dividing fraction of the CD34+/CD38- population.

ORGANISM(S): Homo sapiens

2005-09-08 | E-EMBL-1 | biostudies-arrayexpress

Comparative analysis of the human and mouse placental transcriptome and proteome

An important question for the use of the mouse as a model for studying human disease is the degree of functional conservation of genetic control pathways from human to mouse. The human and mouse placenta show structural similarities but there have been no systematic attempt to assess their molecular...

ORGANISM(S): Mus musculus

2009-06-29 | E-GEOD-13299 | biostudies-arrayexpress

Characterization of a robust mouse model for heart failure with preserved ejection fraction

Heart failure with preserved ejection fraction (HFpEF) is a clinical syndrome with multisystem organ dysfunction in which patients develop symptoms of HF as the result of high left ventricular (LV) diastolic pressure Continuous infusion of angiotensin II and phenylephrine (AngII/PE) demonstrates a s...

ORGANISM(S): Mus musculus

2023-06-07 | GSE221502 | GEO

The Folliculin-Fnip1 pathway deleted in human Birt-Hogg-Dube syndrome is required for B cell development.

Birt-Hogg-Dube (BHD) syndrome is an autosomal dominant disorder characterized by hamartomas of skin follicles, cystic lung disease, and renal neoplasia. Affected individuals carry heterozygous mutations in Folliculin (FLCN), a tumor suppressor gene that becomes biallelically inactivated in kidney t...

ORGANISM(S): Mus musculus

2012-06-16 | E-GEOD-38741 | biostudies-arrayexpress

Characterization of a robust mouse model for heart failure with preserved ejection fraction

PRJNA914700 | ENA

Expression changes of proteins associated with the development of preeclampsia in maternal plasma: a case control study

Defective deep placentation, an abnormal transformation of the spiral arteries in the junctional zone of the myometrium, is known to cause significant obstetrical complications such as preeclampsia (PE), fetal growth restriction, and placental infarcts with fetal death. Serological biomarkers to pre...

ORGANISM(S): Homo sapiens (Human)

2018-07-05 | PXD003419 | Pride

3’RNA-seq of murine CD142− and CD142+ ASPCs freshly sorted with four different anti-CD142 antibodies

To validate that the robustness of Aregs' (CD142+ ASPCs') molecular identity regardless of the antibody used, we performed transcriptomic profiling of freshly isolated CD142− and CD142+ mouse adipose stem and progenitor cells (ASPCs) sorted using four different anti-CD142 antibodies. ASPCs were coll...

ORGANISM(S): Mus musculus

2022-07-04 | E-MTAB-10181 | biostudies-arrayexpress

3’RNA-seq of post-differentiation murine CD142− and CD142+ ASPCs sorted with four different anti-CD142 antibodies

To characterize CD142+ ASPCs (Aregs) after exposure to an adipogenic cocktail we performed bulk RNA-seq (using BRB-seq) of total, CD142− and CD142+ mouse adipose stem and progenitor cells (ASPCs), sorted using four different anti-CD142 antibodies. ASPCs were collected as Lin− (CD31− CD45− TER119−) C...

ORGANISM(S): Mus musculus

2022-07-04 | E-MTAB-10180 | biostudies-arrayexpress

Anti-Colitic Effect of an Exopolysaccharide Fraction from Pediococcus pentosaceus KFT-18 on Dextran Sulfate Sodium-Induced Colitis through Suppression of Inflammatory Mediators.

Not available

S-EPMC9460603 | biostudies-literature

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