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TranscriptomicsPellicle formation of MR-1
Shewanella oneidensis is an important model organism for bioremediation studies because of its diverse respiratory capabilities. In recent years, biofilm development of S. oneidensis has been extensively studied because it is essential to reduce solid metals. As a special form of biofilm, however, p...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-09-01 | E-GEOD-14331 | biostudies-arrayexpress
TranscriptomicsGene expression profile of pellicle cells of Pseudomonas aeruginosa
To investigate the gene expression profile of pellicle cells of Pseudomonas aeruginosa, microarray analysis was performed. Transcriptome profiles of pellicle cells and planktonic cells grown in LB medium were determined by Affymetrix GeneChip. Gene expression pattern that is specific to pellicle cel...
ORGANISM(S): Pseudomonas aeruginosa 
2011-03-31 | E-GEOD-24784 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913
We compared genetic profiles of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913 and revealed genetic features during switch from planktonic to pellicle stage in Pseudoalteromonas sp. SM9913. mRNA profiles of Pseudoalteromonas sp. SM9913 planktonic cells, initia...
ORGANISM(S): Pseudoalteromonas sp. SM9913 
2015-11-03 | E-GEOD-74569 | biostudies-arrayexpress
TranscriptomicsPellicle Stimulon in Mycobacterium tuberculosis
Triplicate 10mL cultures of M. tuberculosis grown in Sautons media without detergent in planktonic (exponential growth phase at OD600 0.2) compared to pellicle (3 weeks growth without shaking in 5% CO2) conditions. comparison of pellicle growth transcriptome to planktonic growth transcriptome, 3 bio...
ORGANISM(S): Mycobacterium tuberculosis 
2013-05-24 | E-GEOD-37392 | biostudies-arrayexpress
ProteomicsProteomic characterization of the mucosal pellicle formed in vitro on a cellular model of oral epithelium
The oral mucosal pellicle is a thin lubricating layer generated by the binding of saliva proteins on epithelial oral cells. The protein composition of this biological structure has been to date studied by targeted analyses of specific salivary proteins. In order to perform a more exhaustive proteome...
ORGANISM(S): Homo sapiens (Human) 
2020-05-06 | PXD017268 | Pride
Saliva Cellular model of oral mucosa Tr146/muc1 cells Mucosal pellicle 
ProteomicsPellicule proteome in Acinetobacter baumannii
The present data set provides the first description of the whole proteome of A. baumannii cells grown as pellicle using a label-free mass spectrometry approach. Results accord with the general findings reporting that sessile bacteria are far more resistant to detrimental conditions than their plankt...
ORGANISM(S): Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) 
2016-12-23 | PXD004167 | Pride
Acinetobacter baumannii Proteomics Label-free Pellicle 
ProteomicsIs the proteomic composition of the salivary pellicle dependent on the substrate material? PV
This study aimed at characterizing the individual proteomic composition of the 3-min pellicle formed on bovine enamel and six restorative materials. Substrate material-specific adsorption patterns were analyzed by comparing the proteomic profiles of the 3-min pellicle with the corresponding saliva.
ORGANISM(S): Homo sapiens (Human) 
2022-04-11 | PXD031452 | Pride
Nano-lc-hr-ms/ms Salivary protein enrichment/depletion Dental materials Quantitative proteomic comparisons Individual 3-min pellicle proteome 
ProteomicsIs the proteomic composition of the salivary pellicle dependent on the substrate material? PI
This study aimed at characterizing the individual proteomic composition of the 3-min pellicle formed on bovine enamel and six restorative materials. Substrate material-specific adsorption patterns were analyzed by comparing the proteomic profiles of the 3-min pellicle with the corresponding saliva.
ORGANISM(S): Homo sapiens (Human) 
2022-04-11 | PXD031464 | Pride
Nano-lc-hr-ms/ms Salivary protein enrichment/depletion Dental materials Quantitative proteomic comparisons Individual 3-min pellicle proteome 
ProteomicsIs the proteomic composition of the salivary pellicle dependent on the substrate material? PIII
This study aimed at characterizing the individual proteomic composition of the 3-min pellicle formed on bovine enamel and six restorative materials. Substrate material-specific adsorption patterns were analyzed by comparing the proteomic profiles of the 3-min pellicle with the corresponding saliva.
ORGANISM(S): Homo sapiens (Human) 
2022-04-11 | PXD031454 | Pride
Nano-lc-hr-ms/ms Salivary protein enrichment/depletion Dental materials Quantitative proteomic comparisons Individual 3-min pellicle proteome 
ProteomicsIs the proteomic composition of the salivary pellicle dependent on the substrate material? PIV
This study aimed at characterizing the individual proteomic composition of the 3-min pellicle formed on bovine enamel and six restorative materials. Substrate material-specific adsorption patterns were analyzed by comparing the proteomic profiles of the 3-min pellicle with the corresponding saliva.
ORGANISM(S): Homo sapiens (Human) 
2022-04-13 | PXD031418 | Pride
Nano-lc-hr-ms/ms Salivary protein enrichment/depletion Dental materials Quantitative proteomic comparisons Individual 3-min pellicle proteome 
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