Peng Han H - OmicsDI

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Unknown (1023)
Proteomics (41)
Genomics (21)
Transcriptomics (14)
Metabolomics (7)

Organisms

Bombyx mori (32)
Onchocerca volvulus (32)
Klebsiella pneumoniae (32)
Musca domestica (32)
Brugia malayi (32)
Schizosaccharomyces pombe (32)
Streptomyces coelicolor A3(2) (32)
Human immunodeficiency virus 1 (32)
Oryza sativa Indica Group (32)
Sinorhizobium meliloti BL225C (32)
Vitis (32)
Sus scrofa domesticus (32)
Ostreococcus tauri (32)
Saccharomyces cerevisiae (32)
Synechocystis sp. PCC 6803 (32)
Olavius algarvensis Gamma 1 endosymbiont (32)
Vitis vinifera (32)
Homo sapiens (25)
Mus musculus (5)
Danio rerio (2)
Oryza sativa (2)
Spalax carmeli (1)
Nannospalax galili (1)
Pseudomonas aeruginosa PAO1 (1)
Setaria italica (1)
Heterocephalus glaber (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Oryctolagus cuniculus (1)
Escherichia coli (1)

Organisms

Mus musculus (1)

Repository

pride (32)
EGA (18)
biostudies-arrayexpress (15)
iProX (7)
MetaboLights (7)
MassIVE (2)
geo (1)
ENA (1)

Tissue

Brain (12)
Cell culture (9)
Early embryonic cell (6)
Plant cell (3)
Epithelial cell (3)
Root (2)
Stem cell (2)
Umbilical vein endothelium (1)
Kidney cell (1)
Cerebral cortex (1)
Neuron (1)
Blood serum (1)
Cell suspension culture (1)
Blood plasma (1)
Leaf (1)
Blood (1)

Disease

Alzheimer's disease (4)
Disease free (4)
Brain disease (2)
Pancreatic carcinoma (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (19)
Mass spectrometry (6)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (4)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Proteogenomics (1)
MSE (1)
Data-independent acquisition (1)
Data-dependent acquisition (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ Orbitrap Elite (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (12)
2023 (11)
2021 (6)
2025 (5)
2015 (4)
2026 (4)
2014 (3)
2012 (3)
2022 (3)
2013 (2)
2011 (2)
2020 (2)
2016 (1)
2009 (1)
2017 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:17351 (4)
CHEBI:77237 (3)
CHEBI:86031 (3)
CHEBI:36592 (3)
CHEBI:83053 (3)
CHEBI:70989 (3)
CHEBI:75168 (3)
CHEBI:30813 (3)
CHEBI:82984 (3)
CHEBI:21891 (3)
CHEBI:27781 (3)
CHEBI:76308 (3)
CHEBI:40410 (3)
CHEBI:24813 (3)
CHEBI:68830 (3)
CHEBI:27823 (3)
CHEBI:73026 (3)
CHEBI:74344 (3)
CHEBI:16196 (3)
CHEBI:73722 (3)
CHEBI:28716 (3)
CHEBI:36595 (3)
CHEBI:26078 (3)
CHEBI:17859 (3)
CHEBI:41321 (3)
CHEBI:72651 (3)
CHEBI:55328 (3)
CHEBI:17015 (3)
CHEBI:18295 (3)
CHEBI:64294 (3)

Metabolite Name

Hexadecanedioic acid mono-L-carnitine ester (3)
Linoleamide (3)
Betaine (3)
Pipecolic acid (3)
Proline (3)
Creatinine (3)
D-Pantothenic acid (2)
SM(d17:1/24:1(15Z)) (2)
LysoPE(0:0/20:5(5Z,8Z,11Z,14Z,17Z)) (2)
N,N-Dimethylguanosine (2)
Succinyladenosine (2)
PC(18:1(11Z)/14:0) (2)
L-Hexanoylcarnitine (2)
LysoPE(16:0/0:0) (2)
Trans-Hexadec-2-enoyl carnitine (2)
LysoPC(20:4(5Z,8Z,11Z,14Z)) (2)
PC(22:4(7Z,10Z,13Z,16Z)/14:0) (2)
N-Palmitoylsphingosine (2)
Valine (2)
LysoPC(22:4(7Z,10Z,13Z,16Z)) (2)
Precocene II (2)
1-Arachidonoylglycerophosphoinositol (2)
LysoPE(20:3(11Z,14Z,17Z)/0:0) (2)
1,3-Diisopropylbenzene (2)
Stearoylethanolamide (2)
Trimethylamine N-oxide (2)
LysoPE(18:1(9Z)/0:0) (2)
2-Methyl-1,3-cyclohexadiene (2)
1-Methylnicotinamide (2)
Eicosadienoic acid (2)

First Public Date

2014 (1)

Study type

RNA-seq of coding RNA (8)
Transcription profiling by array (3)
RNA-seq of non coding RNA (2)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (148)
2022 (146)
2023 (143)
2024 (115)
2021 (112)
2020 (68)
2019 (60)
2018 (51)
2017 (43)
2015 (28)
2016 (27)
2026 (25)
2014 (17)
2013 (13)
2012 (12)
2010 (12)
2011 (9)
2009 (4)
2008 (3)
2007 (1)
2005 (1)

Lab affiliation

St Jude Children's Research Hospital (4)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
St. Jude Children's Research Hospital (2)
Meng Lab, Department of Basic Research, Guangzhou National Laboratory, No.9, XingDaoHuanBei Road, Guangzhou International Bio-island, Haizhu District Guangzhou, Guangdong, 510005, China (1)
Department of Chemistry, Fudan University, PRC (1)
Shanghai Institute of Biochemistry and Cell Biology/Center for Excellence in Molecular Cell Science (1)
Professor Department of Structural Biology Department of Developmental Neurobiology MS 311, D1034C (office) & D1039, D1046 (lab) St. Jude Children's Research Hospital 262 Danny Thomas Place Memphis, TN 38105-3678 (1)
Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China (1)
Department of Chemistry, University of Toronto, Toronto, ON, Canada, M5S 3H6 (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Structure Biology Department St Jude Children’s Research Hospital (1)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
State Key Laboratory of Molecular Oncology, School of Medicine, Tsinghua University, Beijing 100084, China (1)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Exceutive Editor, ACS Chemical Biology (lab head) (1)
Zhejiang University School of Medicine (1)
St. Jude Children's Research Hospital (1)
Westlake University (1)
St jude Children's Research Hospital (1)
St. Jude Children’s Research Hospital (1)

Tags

xref:PubMed:23365080 (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7986 | MetaboLights

Expression analysis of Tim-3 knockdown RAW264.7 cell

Investigation of whole genome gene expression level changes in a Tim-3 knockdown RAW264.7 cell, compared to control siRNA transfected RAW264.7 cell. The Tim-3 knockdown of this cell render it hyper-reactive to TLR stimulation. Tim-3 knockdown analyzed in this study are further described in Li Y, Fen...

ORGANISM(S): Mus musculus

2012-12-05 | GSE42729 | GEO

Expression analysis of Tim-3 knockdown RAW264.7 cell

ORGANISM(S): Mus musculus

2012-12-05 | E-GEOD-42729 | biostudies-arrayexpress

ERBB4 Confers Risk for Polycystic Ovary Syndrome in Han Chinese.

Not available

S-EPMC5307312 | biostudies-literature

Identification and genetic analysis of rare variants in myosin family genes in 412 Han Chinese congenital heart disease patients.

Not available

S-EPMC9544220 | biostudies-literature

The Impact of BCL11A Polymorphisms on Endometrial Cancer Risk Among Chinese Han Females.

Not available

S-EPMC9000540 | biostudies-literature

Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders.

Not available

S-EPMC8881820 | biostudies-literature

Serine Metabolism Tunes Immune Responses To Promote Oreochromis niloticus Survival upon Edwardsiella tarda Infection

Overactive immune response is a critical factor triggering host death upon bacterial infection. However, the mechanism behind the regulation of excessive immune responses is still largely unknown, and the corresponding control and preventive measures are also to be explored. In this study, we find t...

2021-08-18 | MTBLS2974 | MetaboLights

RNT4 3'-UTR insertion/deletion polymorphisms are not associated with atrial septal defect in Chinese Han population: a brief communication.

Not available

S-EPMC3378975 | biostudies-literature

PDX1 and MC4R genetic polymorphisms are associated with type 2 diabetes mellitus risk in the Chinese Han population.

Not available

S-EPMC8543917 | biostudies-literature