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ModelsNeiburga2022 - Arabidopsis thaliana wild-type MEP pathway kinetic model
Kinetic model of extended MEP pathway in wild-type Arabidopsis thaliana. This model was used for the Parameter Estimation task in COPASI. Reactions for isoprene and cis-abienol synthesis are included but made inactive by setting their k=0. A new Parameter Estimation task can be performed by accesin...
2023-02-04 | MODEL2206090001 | BioModels
ModelsNeiburga2022 - Arabidopsis thaliana MEP pathway with cis-abienol synthesis
Kinetic model of extended MEP pathway in Arabidopsis thaliana for cis-abienol production. This model was used for determining total optimization potential (TOP) of cis-abienol production in Arabidopsis thaliana using Spacescanner (https://github.com/atiselsts/spacescanner). This model was used to m...
2023-02-04 | MODEL2206090002 | BioModels
ModelsNeiburga2022 - Arabidopsis thaliana MEP pathway with isoprene synthesis
Kinetic model of extended MEP pathway in Arabidopsis thaliana for isoprene. This model was used for determining total optimization potential (TOP) of isoprene production in Arabidopsis thaliana using Spacescanner (https://github.com/atiselsts/spacescanner). This model was used to make designs D, E ...
2023-02-04 | MODEL2206090003 | BioModels
ModelsBerzins2022 - Crypthecodinium cohnii: ethanol uptake for production of DHA precursor acetyl-CoA
This model is a supplementary material of publication “Kinetic and stoichiometric modeling-based analysis of do-cosahexaenoic acid (DHA) production potential by C.cohnii from glycerol, glucose and ethanol” by Kristaps Berzins, Reinis Muiznieks, Matiss R. Baumanis, Inese Strazdina, Karlis Shvirksts,...
2022-05-06 | MODEL2112290001 | BioModels
ModelsBerzins2022 - Crypthecodinium cohnii: glucose and glycerol uptake for production of DHA precursor acetyl-CoA
This model is a supplementary material of publication “Kinetic and stoichiometric modeling-based analysis of do-cosahexaenoic acid (DHA) production potential by C.cohnii from glycerol, glucose and ethanol” by Kristaps Berzins, Reinis Muiznieks, Matiss R. Baumanis, Inese Strazdina, Karlis Shvirksts,...
2022-05-06 | MODEL2112280001 | BioModels
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