Sort   by:  
 Page size 
ProteomicsGeneration of peptide detectability datasets]{Generation of peptide detectability datasets from single DIA spectra for prediction model fine-tuning
Knowing which peptide can be detected during a mass spectrometry based proteomics analysis is a valuable information. Detectability prediction models predict detectability based on peptides amino acid sequences. Since peptide detectability varies substantially across different instruments, acquisit...
ORGANISM(S): Streptococcus agalactiae STIR-CD-17 Haemophilus influenzae Lacticaseibacillus casei Faecalibacterium prausnitzii Prevotella corporis Bifidobacterium adolescentis Staphylococcus epidermidis Aerococcus viridans Limosilactobacillus fermentum Candida albicans (Yeast) Bacteroides fragilis Enterobacter cloacae Roseburia hominis Klebsiella pneumoniae Escherichia coli Fusobacterium nucleatum Saccharomyces cerevisiae (Baker's yeast) Clostridioides difficile Clostridium perfringens Methanobrevibacter smithii Akkermansia muciniphila Enterococcus faecalis (Streptococcus faecalis) Salmonella enterica subsp. enterica serovar Rissen str. 150 Veillonella rogosae 
2025-10-27 | PXD069521 | Pride
Dia Detectability 
ProteomicsGeneration of peptide detectability datasets]{Generation of peptide detectability datasets from single DIA spectra for prediction model fine-tuning - MS2 quant
Knowing which peptide can be detected during a mass spectrometry based proteomics analysis is a valuable information. Detectability prediction models predict detectability based on peptides amino acid sequences. Since peptide detectability varies substantially across different instruments, acquisiti...
ORGANISM(S): Homo sapiens (Human) 
2026-07-02 | PXD076276 | Pride
Dia Detectability 
ProteomicsS. cerevisiae DDA orbitrap-based benchmark datasets. C4PR_LIV
In this study, label free peptide intensities from a well quantitatively characterised yeast cell lysate were acquired on two orbitrap mass spectrometers (LTQ-Velos and Q Exactive HF). Additionally, samples containing Universal Proteomics Standard and the Proteomics Dynamic range Standard (http://ww...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-08-09 | PXD003472 | Pride
Peptide ionization Hydrophobicity Benchmark dataset Coelution Peptide detectability 
UnknownAbundance-based classifier for the prediction of mass spectrometric peptide detectability upon enrichment (PPA).
Not available
S-EPMC4350037 | biostudies-literature
UnknownThe importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics.
Not available
S-EPMC3006185 | biostudies-literature
UnknownPD-BertEDL: An Ensemble Deep Learning Method Using BERT and Multivariate Representation to Predict Peptide Detectability.
Not available
S-EPMC9604182 | biostudies-literature
UnknownTo Fly, or Not to Fly, That Is the Question: A Deep Learning Model for Peptide Detectability Prediction in Mass Spectrometry.
Not available
S-EPMC12150320 | biostudies-literature
UnknownSystematic Analysis of Yeast Proteome Reveals Peptide Detectability Factors for Mass Spectrometry.
Not available
S-EPMC4780416 | biostudies-literature
ProteomicsFormic acid and Acetic acid for peptide LC-MS
Despite the general acceptance of formic acid as the additive of choice for peptide reversed-phase LC-MS/MS applications, some still argue that the selection of acetic acid represents a better option. To settle this debate, we investigated both the difference in MS sensitivity and chromatographic be...
ORGANISM(S): Homo Sapiens (human) 
2022-12-10 | PXD029416 | JPOST Repository
ProteomicsDrosophila melanogaster exp 135
PeptideRank is an approach that uses a rank-based algorithm for peptide detectability prediction from shotgun proteomics data. The best performance is achieved when it is trained on organism-specific shotgun proteomics datasets. The Drosophila shotgun proteomics data presented here have been used am...
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2019-06-04 | PXD000726 | Pride
Nuclear and cytoplasmic fraction Kc167 cells Oge Drosophila melanogaster 
Sort   by:  
 Page size