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ProteomicsGeneration of peptide detectability datasets]{Generation of peptide detectability datasets from single DIA spectra for prediction model fine-tuning
Knowing which peptide can be detected during a mass spectrometry based proteomics analysis is a valuable information. Detectability prediction models predict detectability based on peptides amino acid sequences. Since peptide detectability varies substantially across different instruments, acquisit...
ORGANISM(S): Streptococcus agalactiae STIR-CD-17 Haemophilus influenzae Lacticaseibacillus casei Faecalibacterium prausnitzii Prevotella corporis Bifidobacterium adolescentis Staphylococcus epidermidis Aerococcus viridans Limosilactobacillus fermentum Candida albicans (Yeast) Bacteroides fragilis Enterobacter cloacae Roseburia hominis Klebsiella pneumoniae Escherichia coli Fusobacterium nucleatum Saccharomyces cerevisiae (Baker's yeast) Clostridioides difficile Clostridium perfringens Methanobrevibacter smithii Akkermansia muciniphila Enterococcus faecalis (Streptococcus faecalis) Salmonella enterica subsp. enterica serovar Rissen str. 150 Veillonella rogosae 
2025-10-27 | PXD069521 | Pride
Dia Detectability 
GenomicsHide and seek: species detectability in a biodiversity hotspot increased by environmental DNA
Species detectability through eDNA in a biodiverse site
PRJEB85100 | ENA
ProteomicsS. cerevisiae DDA orbitrap-based benchmark datasets. C4PR_LIV
In this study, label free peptide intensities from a well quantitatively characterised yeast cell lysate were acquired on two orbitrap mass spectrometers (LTQ-Velos and Q Exactive HF). Additionally, samples containing Universal Proteomics Standard and the Proteomics Dynamic range Standard (http://ww...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-08-09 | PXD003472 | Pride
Peptide ionization Hydrophobicity Benchmark dataset Coelution Peptide detectability 
GenomicsDepletion of erythropoietic miR-486-5p and miR-451a improves detectability of rare microRNAs in peripheral blood-derived small RNA sequencing libraries
Erythroid-specific miR-451a and miR-486-5p are two dominant microRNAs (miRNAs) in human peripheral blood-derived small RNA sequencing libraries. Their overabundance reduces diversity as well as complexity of libraries after PCR amplification and consequently causes negative effects such as inaccurat...
ORGANISM(S): Homo sapiens 
2020-01-28 | GSE138318 | GEO
UnknownCarcass Persistence and Detectability: Reducing the Uncertainty Surrounding Wildlife-Vehicle Collision Surveys.
Not available
S-EPMC5091900 | biostudies-literature
UnknownModeling occupancy of hosts by mistletoe seeds after accounting for imperfect detectability.
Not available
S-EPMC4431672 | biostudies-literature
ProteomicsDetectability of biotin tags in LC-MS/MS
Raw files, corrected search engine files, and sequence database files for "Detectability of Biotin Tags by LC-MS/MS". Custom PTMs were added for the modifications that result from EZ-Link Sulfo-NHS-SS-Biotin that were not available in the database.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-03-10 | MSV000087032 | MassIVE
UnknownThe importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics.
Not available
S-EPMC3006185 | biostudies-literature
UnknownAssessing small-lesion detectability and acquisition time optimisation in silicon-detector-Based PET: a phantom study.
Not available
S-EPMC12858686 | biostudies-literature
UnknownAbundance-based classifier for the prediction of mass spectrometric peptide detectability upon enrichment (PPA).
Not available
S-EPMC4350037 | biostudies-literature
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