Pereira L L - OmicsDI

Show results for

Unknown (3976)
Transcriptomics (152)
Proteomics (85)
Genomics (37)
Metabolomics (13)
Models (4)

Organisms

Homo sapiens (110)
Mus musculus (47)
Saccharomyces cerevisiae (19)
Arabidopsis thaliana (10)
Oryza sativa Japonica Group (6)
Medicago truncatula (4)
Rattus norvegicus (4)
Citrus sinensis (4)
Moniliophthora perniciosa (3)
Danio rerio (3)
Squalius pyrenaicus (2)
Zea mays (2)
Neisseria gonorrhoeae (1)
Squalius alburnoides (1)
Tigriopus californicus (1)
Micrococcus luteus NCTC 2665 (1)
Pyrus communis (1)
Enchytraeus albidus (1)
Eucalyptus grandis (1)
Salmonella enterica (1)
Theobroma cacao (1)
Schistosoma mansoni (1)
Paracoccidioides brasiliensis (1)
Aedes aegypti (1)
Oncorhynchus mykiss (1)
Cryptococcus neoformans (1)
Candida albicans (1)
Drosophila melanogaster (1)
cellular organisms (1)
Ardisia guianensis (1)

Organisms

Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (158)
pride (66)
EGA (29)
MassIVE (16)
MetaboLights (13)
BioModels (4)
ENA (2)
geo (1)
jPOST (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (12)
Epithelial cell (8)
Brain (5)
Skeletal muscle (4)
Liver (3)
Blood (2)
Blood cell (2)
Fungal cell (2)
Leaf (2)
Pancreas (2)
Plant cell (2)
Stem cell (2)
Urine (2)
Whole body (2)
Astrocyte (1)
Blood platelet (1)
Bone (1)
Bone marrow (1)
Cell suspension culture (1)
Colon (1)
Dendritic cell (1)
Diploid cell (1)
Extracellular exosome (1)
Extracellular matrix (1)
Extracellular vesicle (1)
Flower bud (1)
HeLa cell (1)
Midbrain (1)
Milk (1)
Monocyte (1)

Disease

Glioblastoma (2)
COVID-19 (2)
Colon cancer (2)
Obesity (2)
Pancreatic ductal adenocarcinoma (2)
Paracoccidioidomycosis (2)
Tubular aggregate myopathy 1 (2)
Tubular aggregate myopathy 2 (2)
Polycythemia vera (1)
Pilocytic astrocytoma (1)
Normal (1)
Acute leukemia (1)
Brain glioblastoma multiforme (1)
Brain meningioma (1)
Breast cancer (1)
Central precocious puberty (1)
Chagas disease (1)
Congenital heart disease (1)
Human immunodeficiency virus infectious disease (1)
Mucopolysaccharidosis IVA (1)
Myotonic dystrophy type 1 (1)
Ovarian serous carcinoma (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)
Severe acute respiratory syndrome (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (66)
Shotgun proteomics (33)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (9)
Data-dependent acquisition (9)
Illumina 15K (8)
SWATH MS (5)
Data-independent acquisition (4)
Gel-based experiment (3)
Mass spectrometry assay (2)
HDMSE (2)
MSE (2)
Top-down proteomics (2)
Infinium Omni2.5M (1)
NMR spectroscopy (1)
DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (6)
Illumina NovaSeq 6000 (4)
GC MS (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
Gas Chromatography MS - (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - negative - reverse phase (3)
G2565AA DNA microarray scanner [Agilent] (2)
NextSeq 500 (2)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - (2)
Illumina NovaSeq X (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap (1)
MicrOTOF-Q (1)
Q Exactive HF-X (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
LECO Pegasus III, GCTOFMS (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Varian (1)
Xevo QTof MS (Waters) (1)

Publication Date

2013 (28)
2014 (21)
2010 (20)
2016 (19)
2015 (19)
2022 (16)
2012 (16)
2026 (15)
2025 (15)
2024 (14)
2021 (12)
2008 (11)
2018 (10)
2023 (9)
2011 (9)
2020 (7)
2009 (6)
2017 (5)
2019 (3)
2007 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

P38987 (1)
P47113 (1)
89462.XP_006040351.1 (1)
89462.XP_006040625.1 (1)
89462.XP_006041235.1 (1)
89462.XP_006041616.1 (1)
89462.XP_006041942.1 (1)
89462.XP_006041949.1 (1)
89462.XP_006042170.1 (1)
89462.XP_006042233.1 (1)
89462.XP_006042264.1 (1)
89462.XP_006042334.1 (1)
89462.XP_006042420.1 (1)
89462.XP_006042628.1 (1)
89462.XP_006042816.1 (1)
89462.XP_006042870.1 (1)
89462.XP_006042923.1 (1)
89462.XP_006043252.1 (1)
89462.XP_006043597.1 (1)
89462.XP_006044210.1 (1)
89462.XP_006044367.1 (1)
89462.XP_006045039.1 (1)
89462.XP_006045164.1 (1)
89462.XP_006045255.1 (1)
89462.XP_006045325.1 (1)
89462.XP_006045573.1 (1)
89462.XP_006045767.1 (1)
89462.XP_006046028.1 (1)
89462.XP_006046104.1 (1)
89462.XP_006046159.1 (1)

CHEBI ID

CHEBI:18012 (10)
CHEBI:30769 (9)
CHEBI:6650 (8)
CHEBI:15428 (7)
CHEBI:15741 (7)
CHEBI:15756 (7)
CHEBI:30915 (7)
CHEBI:16958 (6)
CHEBI:17234 (6)
CHEBI:17568 (6)
CHEBI:29016 (6)
CHEBI:32816 (6)
CHEBI:16027 (5)
CHEBI:16335 (5)
CHEBI:17154 (5)
CHEBI:17754 (5)
CHEBI:17822 (5)
CHEBI:17992 (5)
CHEBI:18183 (5)
CHEBI:22660 (5)
CHEBI:25094 (5)
CHEBI:26271 (5)
CHEBI:28300 (5)
CHEBI:28716 (5)
CHEBI:28875 (5)
CHEBI:7916 (5)
CHEBI:15963 (4)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:33282 (1)

Metabolite Name

Citric acid (4)
Fumaric acid (4)
Malic acid (4)
Succinic acid (4)
Cholic acid (3)
Glycine (3)
Pyruvic acid (3)
Taurocholic acid (3)
Taurodeoxycholic acid (3)
Ursodeoxycholic acid (3)
2-Hydroxyhexadecanoic acid (2)
2-Methylglutaric acid (2)
Arachidic acid (2)
Azelaic acid (2)
Chenodeoxycholic acid (2)
Citric acid (2)
Deoxycholic acid (2)
Elaidic acid (2)
Glucose (2)
Glycocholic acid (2)
Glycodeoxycholic acid (2)
Glycoursodeoxycholic acid (2)
Hexadecanedioic acid (2)
Hippuric acid (2)
Indoxyl sulfate (2)
Myristic acid (2)
Ornithine (2)
Palmitic acid (2)
Salicylic acid (2)
Sebacic acid (2)

First Public Date

2024 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)
Computational model (1)

Lab affiliation

Department of Infectious Diseases, University Hospital Zurich, University of Zurich, Zurich, Switzerland (2)
PI in de Department of Molecular Biology in Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO)- Universidad Autónoma de Madrid (UAM), leading the project "Role of mitochondrial bioenergetics in skeletal muscle secretrome during exercise and pathology". (2)
The University of Melbourne (2)
1 Department of Genetics, Harvard Medical School, Boston, MA 02115 (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (lab head) (1)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
Analytical Biochemistry and Proteomics Unit (1)
Analytical Chemistry Lab Fondazione Istituto Italiano di Tecnologia Via Morego 30, 16163 Genova Italy (1)
Astrazeneca (1)
Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009, Australia (1)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (1)
CNC-Center for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal; Biocant, Biotechnology Innovation Center, 3060-197 Cantanhede, Portugal; (1)
Center for Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering Ghent University, Coupure Links 653, 9000 Ghent, Belgium, Center for Advanced Process Technology for Urban Resource recovery (CAPTURE), Frieda Saeysstraat 1, 9052 Ghent, Belgium (1)
Center for RNA Biology: From Genome to Therapeutics Department of Biochemistry and Biophysics University of Rochester Medical Center Rochester, NY, 14642, USA (1)
Chemistry Institute, LADETEC, Proteomics Laboratory, UFRJ, RJ, Brazil. (1)
Computational and Experimental Biology Group, NOVA Medical School-Research, Faculdade de Ciências Médicas, Universidade NOVA de Lisboa, Campo dos Mártires da Pátria, 130, 1169-056 Lisbon, Portugal. (1)
Department of Genetics and Evolution, Federal University of São Carlos, São Carlos, Brazil. (1)
Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas (1)
Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI USA. (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo (1)
Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo, Avenida Lineu Prestes 1374, Room 9, Butanta, Sao Paulo (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (1)
Department of Plant Pathology, University of Arkansas, Fayetteville, AR, USA (1)
Department of Tumor Biology, University Medical Center Hamburg‑Eppen‑dorf, Martinistraße 52, 20246 Hamburg, Germany. (1)
Division of Cell Biology MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (1)
Division of Hematology and Central Hematology Laboratory, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland (1)
EMBL Heidelberg (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (1)